tRNAmodpred specifications

Information


Unique identifier OMICS_20467
Name tRNAmodpred
Interface Web user interface
Restrictions to use None
Input data A protein sequence.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Janusz Bujnicki <>

Publication for tRNAmodpred

tRNAmodpred in publication

PMCID: 5861454
PMID: 29390076
DOI: 10.1093/nar/gky045

[…] cutoff of 1eā€“4 and seed size of 3. trna genes in the genome were searched using trnascan (). the genes for potential trna posttranscriptional modifications and their targets were predicted with trnamodpred (). phylogeny-based filtration and ncbi smartblast were performed to examine the output of trnamodpred., the codon usage bias of the cdss was evaluated by measurement of relative […]


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tRNAmodpred institution(s)
Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology, Warsaw, Poland; Department of Microbiology and Cell Science, University Florida, Gainesville, FL, USA; Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University, Poznan, Poland
tRNAmodpred funding source(s)
Supported by the Foundation for Polish Science (FNP, grant TEAM/2009ā€“4/2) and subsequently by the Polish National Science Center (NCN, grant 2012/04/A/ NZ2/00455); the European Commission (7FP grant Fishmed, GA No. 316125 at IIMCB); the European Union (European Social Fund ā€“ stipend for Mazovian PhD students, Human Capital Operational Program 2007ā€“2013); the Polish National Science Centre (NCN) (grant 2011/03/D/NZ8/03011) and by a fellowship for outstanding young scientists from the Polish Ministry of Science and Higher Education; the National Institutes of Health (grant number R01 GM70641).

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