tRNAscan-SE specifications
- Unique identifier:
- OMICS_00385
- Software type:
- Package/Module
- Restrictions to use:
- None
- Output data:
- The default output for tRNAscan-SE includes the location of each identified tRNA, the predicted anticodon, introns (if present) and the tRNA covariance model score.
- Computer skills:
- Advanced
- Stability:
- Stable
- Alternative names:
- tRNAscan, tRNA Scan-SE
- Interface:
- Command line interface
- Input format:
- FASTA, GenBank, EMBL, GCG, IG, raw sequence
- Operating system:
- Unix/Linux
- Version:
- 1.21
- Maintained:
- Yes
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tRNAscan-SE distribution
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tRNAscan-SE specifications
- Unique identifier:
- OMICS_00385
- Interface:
- Web user interface
- Input format:
- FASTA, GenBank, EMBL, GCG, IG, raw sequence
- Computer skills:
- Basic
- Stability:
- Stable
- Alternative names:
- tRNAscan, tRNA Scan-SE
- Restrictions to use:
- None
- Output data:
- The default output for tRNAscan-SE includes the location of each identified tRNA, the predicted anticodon, introns (if present) and the tRNA covariance model score.
- Version:
- 1.21
- Maintained:
- Yes
tRNAscan-SE support
Maintainer
- Todd M. Lowe <>
- Todd M. Lowe <>
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Publications
-
(Schattner et al., 2005)
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs.
Nucleic Acids Res.
PMID: 15980563 DOI: 10.1093/nar/gki366
Institution(s)
Department of Biomolecular Engineering and the UCSC RNA Center, University of California Santa Cruz, Santa Cruz, CA, USA
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