TRNInfer statistics
TRNInfer specifications
Information
Unique identifier | OMICS_24049 |
---|---|
Name | TRNInfer |
Alternative name | Transcriptional Regulatory Networks Infer |
Software type | Application/Script |
Interface | Command line interface |
Restrictions to use | None |
Operating system | Unix/Linux |
Computer skills | Advanced |
Stability | Stable |
Maintained | Yes |
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Maintainers
- person_outline Luonan Chen <>
- person_outline Xiang-Sun Zhang <>
Publication for Transcriptional Regulatory Networks Infer
TRNInfer in publications
(2)[…] them into one of them. for instance, reveal also employs mutual information technique beyond boolean network, so it can also belong to correlation-based methods. in (table ), some methods such as trninfer [] and inferelator [] reconstruct the four levels of transcriptional regulatory relationships, while others such as pca-cmi [] and wgcna [] generally identify gene regulations without […]
Refining transcriptional regulatory networks using network evolutionary models and gene histories
[…] different levels of sparseness, we applied different thresholds to the connection matrix to get final edges. in our experiments we use murphy's bayesian network toolbox [] for the dbn approach and trninfer[] for the differential equation approach; we refer to them as dbi and dei, respectively., the principle of our phylogenetic approach is that phylogenetically close organisms are likely […]
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