TRNInfer

[…] them into one of them. for instance, reveal also employs mutual information technique beyond boolean network, so it can also belong to correlation-based methods. in (table ), some methods such as trninfer [] and inferelator [] reconstruct the four levels of transcriptional regulatory relationships, while others such as pca-cmi [] and wgcna [] generally identify gene regulations without […]

[…] different levels of sparseness, we applied different thresholds to the connection matrix to get final edges. in our experiments we use murphy's bayesian network toolbox [] for the dbn approach and trninfer[] for the differential equation approach; we refer to them as dbi and dei, respectively., the principle of our phylogenetic approach is that phylogenetically close organisms are likely […]