TRRD specifications

Information


Unique identifier OMICS_28541
Name TRRD
Alternative name Transcription Regulatory Regions Database
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Version 6.0
Maintained Yes

Subtools


  • TRRD viewer
  • TRRDBIB
  • TRRDEXP
  • TRRDFACTORS
  • TRRDGENES
  • TRRDLCR
  • TRRDSITES
  • TRRDSTARTS
  • TRRDUNITS

Maintainer


  • person_outline Nikolay Kolchanov

Publications for Transcription Regulatory Regions Database

TRRD citation

library_books

Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP Seq data

2014
BMC Genomics
PMCID: 4234207
PMID: 24472686
DOI: 10.1186/1471-2164-15-80

[…] from the mm8 and hg18 genome assemblies.To train the pattern-matching models we gathered the set of 53 known BSs (Additional file : Table S2) of FoxA family TFs. The sequences were extracted from the TRRD database [] and by manual literature mining. The selected BSs were confirmed by at least one of the following methods: (1) DNase I footprinting using purified protein, (2) electrophoretic mobilit […]

TRRD institution(s)
Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia
TRRD funding source(s)
Supported by the National Human Genome Program, State Committee on Science and Technology of the Russian Federation, Integrative Project of the Siberian Branch of the Russian Academy of Sciences, and Russian Foundation for Basic Research (grant nos 01-07-376, 00-04-49229, 00-04-49225, 00-07-90337 and 99-07-90203).

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