TRUmiCount specifications


Unique identifier OMICS_32725
Name TRUmiCount
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format BAM,TSV
Output format TSV
Operating system Unix/Linux, Mac OS
Programming languages R, Shell (Bash)
License GNU Affero General Public License version 3
Computer skills Advanced
Version 0.9.11
Stability Stable
Maintained Yes




No version available



  • person_outline Florian Pflug

Publication for TRUmiCount

TRUmiCount citation


In vivo insertion pool sequencing identifies virulence factors in a complex fungal–host interaction

PLoS Biol
PMCID: 5912717
PMID: 29684023
DOI: 10.1371/journal.pbio.2005129

[…] cted genomes/# total genomes) between mutants and flanks, the mutant- and flank-specific losses were estimated from the observed mutant- and flank-specific distributions of reads per UMI () using the TRUmiCount algorithm (see for details) []. To discern stochastic fluctuations from knockout phenotypes, the number of true UMIs detected in the output pool for neutral insertional mutants were assume […]

TRUmiCount institution(s)
Center for Integrative Bioinformatics Vienna (CIBIV), Vienna, Austria; Joint Institute of the University of Vienna and Medical University of Vienna, Max F. Perutz Laboratories (MFPL), Vienna, Austria; Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, Vienna, Austria
TRUmiCount funding source(s)
Supported by the Austrian Science Fund (FWF): W1207-B09.

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