trumpet specifications

Information


Unique identifier OMICS_30822
Name trumpet
Alternative name transcriptome-guided quality assessment of methylated RNA immunoprecipitation sequencing data
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some files from m6A-seq data together with the transcriptome information.
Input format BAM
Output data An assessment report concerning the data quality.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 0.3.6
Stability Stable
Requirements
Guitar, ggplot2, reshape2, exomePeak, xtable, knitr, rmarkdown, graphics, stats, grid, GenomicFeatures, GenomicRanges, AnnotationDbi, GenomicAlignments, S4Vectors, scales
Maintained Yes

Download


download.png

Versioning


No version available

Maintainers


  • person_outline Zhang S.W.
  • person_outline Teng Zhang

Publication for transcriptome-guided quality assessment of methylated RNA immunoprecipitation sequencing data

trumpet institution(s)
Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi’an, China; School of Information and Control Engineering, China University of Mining and Technology, Xuzhou, China; Department of Biological Sciences, Research Center for Precision Medicine, Xi’an Jiaotong-Liverpool University, Suzhou, China; Institute of Integrative Biology, University of Liverpool, Liverpool, UK
trumpet funding source(s)
Supported by the National Scientific Foundation of China [61473232, 61501466, 31671373 and 91430111] and Jiangsu University Natural Science Research Program [16KJB180027].

trumpet reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review trumpet