trumpet specifications


Unique identifier OMICS_30822
Name trumpet
Alternative name transcriptome-guided quality assessment of methylated RNA immunoprecipitation sequencing data
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Some files from m6A-seq data together with the transcriptome information.
Input format BAM
Output data An assessment report concerning the data quality.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 0.3.6
Stability Stable
Guitar, ggplot2, reshape2, exomePeak, xtable, knitr, rmarkdown, graphics, stats, grid, GenomicFeatures, GenomicRanges, AnnotationDbi, GenomicAlignments, S4Vectors, scales
Maintained Yes




No version available


  • person_outline Zhang S.W.
  • person_outline Teng Zhang

Publication for transcriptome-guided quality assessment of methylated RNA immunoprecipitation sequencing data

trumpet institution(s)
Key Laboratory of Information Fusion Technology of Ministry of Education, School of Automation, Northwestern Polytechnical University, Xi’an, China; School of Information and Control Engineering, China University of Mining and Technology, Xuzhou, China; Department of Biological Sciences, Research Center for Precision Medicine, Xi’an Jiaotong-Liverpool University, Suzhou, China; Institute of Integrative Biology, University of Liverpool, Liverpool, UK
trumpet funding source(s)
Supported by the National Scientific Foundation of China [61473232, 61501466, 31671373 and 91430111] and Jiangsu University Natural Science Research Program [16KJB180027].

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