TRUST

A method for ab-initio determination of internal repeats in proteins. The high sensitivity and accuracy of the method is achieved by exploiting the concept of transitivity of alignments. TRUST is a useful and reliable tool for mining tandem and non-tandem repeats in protein sequence databases, capable of predicting multiple repeat types with varying intervening segments within a single sequence.

TRUST specifications

Desktop Web

Information

Unique identifier	OMICS_10030
Name	TRUST
Software type	Package/Module
Interface	Command line interface
Restrictions to use	None
Input data	Protein sequences
Input format	FASTA
Operating system	Unix/Linux
Computer skills	Advanced
Stability	Stable
Maintained	Yes

Versioning

No version available

Maintainer

Jaap Heringa

Information

Unique identifier	OMICS_10030
Name	TRUST
Interface	Web user interface
Restrictions to use	None
Input data	Protein sequences
Input format	FASTA
Computer skills	Basic
Stability	Stable
Maintained	Yes

Maintainer

Jaap Heringa

Publication for TRUST

Tracking repeats using significance and transitivity.

2004 Bioinformatics

PMID: 15262814

TRUST institution(s)

Centre for Integrative Bioinformatics (IBIVU), Faculty of Sciences and Faculty of Earth and Life Sciences, Vrije Universiteit Amsterdam, Amsterdam, Netherlands

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