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Protocols

TSA specifications

Information


Unique identifier OMICS_32600
Name TSA
Alternative name Transcriptome Shotgun Assembly
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Allowed
Maintained Yes

Additional information


https://www.ncbi.nlm.nih.gov/genbank/TSAfaq

TSA citations

 (215)
library_books

RNA Seq transcriptome analysis of Amaranthus palmeri with differential tolerance to glufosinate herbicide

2018
PLoS One
PMCID: 5908165
PMID: 29672568
DOI: 10.1371/journal.pone.0195488

[…] 60017-SAMN07260028. The trimmed, paired-end .fastq files for each of the 12 samples were submitted to the Sequence Read Archive, SRR5759376—SRR5759387. Finally, the transcriptome was submitted to the Transcriptome Shotgun Assembly Sequence Database. The transcriptome, consisting of 72,780 transcripts, is under TSA submission: SUB2788796. […]

library_books

Sialome diversity of ticks revealed by RNAseq of single tick salivary glands

2018
PLoS Negl Trop Dis
PMCID: 5919021
PMID: 29652888
DOI: 10.1371/journal.pntd.0006410

[…] he input are available in the results section, which also contains hyperlinks to several databases, as explained previously [, ]. Deduced coding sequences and their translations were deposited to the Transcriptome Shotgun Assembly database DDBJ/EMBL/GenBank under the accessions GEGO01000001-GEGO01007692 […]

library_books

Tracing the evolution of the heterotrimeric G protein α subunit in Metazoa

2018
BMC Evol Biol
PMCID: 5896119
PMID: 29642851
DOI: 10.1186/s12862-018-1147-8

[…] CBI’s genome and assembly browser [] for our starting queries as these databases contain easily accessible and high quality genome annotations. To validate gene gain and loss events, we evaluated the transcriptome shotgun assembly (TSA) sequence database, expression sequence tag (EST) database, and UniGene databases, accessed through NCBI [, , , ], using amino acid-based (tblastn) search queries. […]

library_books

De novo Assembly of the Burying Beetle Nicrophorus orbicollis (Coleoptera: Silphidae) Transcriptome Across Developmental Stages with Identification of Key Immune Transcripts

2018
J Genomics
PMCID: 5916875
PMID: 29707046
DOI: 10.7150/jgen.24228

[…] red-end reads of individual stage libraries to the representative transcriptome were obtained using Bowtie2 (version 2.1.0) by alignment of paired-end reads to the representative transcriptome. This Transcriptome Shotgun Assembly project has been deposited at DDBJ/ENA/GenBank under the accession GGAA00000000. The version described in this paper is the first version, GGAA01000000.Transcript Covera […]

library_books

Proteomic endorsed transcriptomic profiles of venom glands from Tityus obscurus and T. serrulatus scorpions

2018
PLoS One
PMCID: 5862453
PMID: 29561852
DOI: 10.1371/journal.pone.0193739

[…] me of the assembled cDNAs.The raw data generated in this project was deposited in the GenBank BioProject section under the accession code PRJNA260533 and BioSample SAMN03381142 and SAMN04563605. This Transcriptome Shotgun Assembly project was deposited at DDBJ/EMBL/GenBank under the accession GEMQ00000000 and GEUW00000000. The version described in this paper is the first version, GEMQ01000000 and […]

library_books

Differential gene expression revealed with RNA Seq and parallel genotype selection of the ornithine decarboxylase gene in fish inhabiting polluted areas

2018
Sci Rep
PMCID: 5859300
PMID: 29556088
DOI: 10.1038/s41598-018-23182-z

[…] hat of most of the transcriptome assemblies reported in a previous work. It is important to note that 11,094 contigs were matched by blast, which corresponds to 83.7% of the transcripts blasted. This Transcriptome Shotgun Assembly project was deposited in DDBJ/ENA/GenBank under the accession number GEVG00000000. The version described in this paper is the first version, GEVG00000000.1.When the read […]

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