TSSAR specifications

Information


Unique identifier OMICS_03523
Name TSSAR
Interface Web user interface
Restrictions to use None
Programming languages Java, Perl, R
License Apache License version 2.0, GNU General Public License version 2.0
Computer skills Basic
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Fabian Amman <>

Additional information


http://nibiru.tbi.univie.ac.at/TSSAR/workflow

TSSAR article

TSSAR institution(s)
Bioinformatics Group, Department of Computer Science and the Interdisciplinary Center for Bioinformatic, University of Leipzig, Leipzig, Germany; Institute for Theoretical Chemistry, University of Vienna, Vienna, Austria; Center for Integrative Bioinformatics Vienna (CIBIV), Max F. Perutz Laboratories, University of Vienna, Medical University of Vienna, Vienna, Austria; Department of Biochemistry and Molecular Cell Biology, Max F. Perutz Laboratories, University of Vienna, Vienna, Austria; Center for RNA in Technology and Health, University of Copenhagen, Frederiksberg C, Denmark; Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany; Fraunhofer Institute for Cell Therapy and Immunology, Leipzig, Germany; Santa Fe Institute, Santa Fe, NM, USA; Research group Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, Vienna, Austria
TSSAR funding source(s)
Supported by the Austrian Science Fund (FWF) projects “In silico annotation of noncoding RNAs and their targets” (AF 0430511), “RNA regulation of the transcriptome” (F43), the German ministry of science (0316165C as part of the e:Bio initiative), and the Deutsche Forschungsgemeinschaft (STA 850/10–2 within the SPP 1258 “Sensory and regulatory RNAs in Prokaryotes”).

TSSAR review

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Amr Galal

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Web
The tools is great, powerful and better than others for detect TSS
just the web tool doesn't give same results as the stand alone one using same parameters

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