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Enables the automatic inference of transcription start sites (TSSs) from dRNA-seq data. TSSer allows the discovery of TSSs that may not be expected or easily evaluated such as those of antisense transcripts, alternative TSSs and TSSs corresponding to novel genes. This method can provide an initial set of high-confidence TSSs that can be used to train more complex models of transcription regulation, which could be used to iteratively identify additional TSSs, that may be supported by a small number of reads.

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TSSer forum

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TSSer classification

TSSer specifications

Unique identifier:
OMICS_02191
Interface:
Command line interface
Operating system:
Unix/Linux
Version:
1.0
Maintained:
Yes
Software type:
Pipeline/Workflow
Restrictions to use:
None
Computer skills:
Advanced
Stability:
Stable

TSSer distribution

versioning

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TSSer support

Documentation

Maintainer

  • Mihaela Zavolan <>

Credits

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Publications

Institution(s)

Computational and Systems Biology, Biozentrum, University of Basel, Basel, Switzerland

Funding source(s)

Supported by the University of Basel and the Swiss National Science Foundation (grant number 31003A_147013).

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