TSSPlant specifications

Information


Unique identifier OMICS_14906
Name TSSPlant
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A single or multiple query sequences.
Input format FASTA
Output data The final set of predicted transcription start sites (TSSs) for both TATA and/or TATA-less promoter classes.
Output format TXT
Operating system Unix/Linux, Mac OS
Computer skills Advanced
Requirements GFORTRAN
Maintained No

Taxon


  • Plants

Versioning


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Maintainer


This tool is not maintained anymore.

Additional information


http://linux1.softberry.com/berry.phtml?topic=tssp&group=programs&subgroup=promoter

TSSPlant article

TSSPlant institution(s)
King Abdullah University of Science and Technology, Thuwal, Saudi Arabia; Institue of Molecular Biology and Biotechnologies, ANAS, Baku, Azerbaijan; Softberry Inc, Mount Kisco, NY, USA
TSSPlant funding source(s)
This work was supported by the Abdullah University of Science and Technology (KAUST) Office of Sponsored Research (OSR) (URF/1/1976-02, FCS/1/2448-01), by the Science Development Foundation under the President of the Republic of Azerbaijan (Grant EIF-2010-1(1)-40/27-3).

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