TumorBoost statistics

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Citations per year

Number of citations per year for the bioinformatics software tool TumorBoost
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Tool usage distribution map

This map represents all the scientific publications referring to TumorBoost per scientific context
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TumorBoost specifications

Information


Unique identifier OMICS_08929
Name TumorBoost
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina, Affymetrix, Agilent Technologies
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Henrik Bengtsson

Publication for TumorBoost

TumorBoost citations

 (3)
library_books

Deciphering clonality in aneuploid breast tumors using SNP array and sequencing data

2014
Genome Biol
PMCID: 4220069
PMID: 25270265
DOI: 10.1186/s13059-014-0470-7

[…] of matched normal samples where available, or otherwise position-specific median total SNP array signals across the normal samples, giving TCNs for all tumors. BAFs were obtained and processed using TumorBoost. Allele-specific CN segments were identified from TCNs and BAFs with the paired or non-paired PSCBS method [] for samples with or without a matched normal sample. After this step we have a […]

library_books

Colorectal cancer driver genes identified by patient specific comparison of cytogenetic microarray

2014
Genom Data
PMCID: 4535873
PMID: 26484062
DOI: 10.1016/j.gdata.2014.02.004

[…] was used to assess genome wide copy number frequencies for the 15 patients. Furthermore, Aroma.affymetrix – another CBS implementation as part of the BioConductor's DNACopy library and the associated TumorBoost algorithm (which normalize allele specific copy numbers for tumor samples with paired normal) – was also used to identify genomic events. We obtained conforming results from both implementa […]

library_books

Novel Genes Associated with Colorectal Cancer Are Revealed by High Resolution Cytogenetic Analysis in a Patient Specific Manner

2013
PLoS One
PMCID: 3813709
PMID: 24204606
DOI: 10.1371/journal.pone.0076251

[…] , USA) was used to assess genome wide copy number frequencies for the 15 patients. Further, Aroma.affymetrix – another CBS implementation as part of BioConductor's DNACopy library and the associated TumorBoost algorithm (which normalize allele specific copy numbers for tumor samples with paired normals) were also used to identify genomic events. We obtained conforming results from both implementa […]


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TumorBoost institution(s)
Department of Statistics, University of California, Berkeley, USA; Bioinformatics Division, Walter & Eliza Hall Institute of Medical Research, Parkville, Australia

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