TumorFusions specifications

Information


Unique identifier OMICS_23289
Name TumorFusions
Alternative names TCGA Fusion Gene Database, Tumor Fusion Gene Data Portal
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Not allowed
Maintained Yes

Maintainers


  • person_outline Siyuan Zheng
  • person_outline Roel Verhaak

Publication for TumorFusions

TumorFusions citations

 (2)
library_books

Somatic genome editing with the RCAS TVA CRISPR Cas9 system for precision tumor modeling

2018
Nat Commun
PMCID: 5899147
PMID: 29654229
DOI: 10.1038/s41467-018-03731-w

[…] GlioVis data portal (http://gliovis.bioinfo.cnio.es). Sample IDs of patients carrying NTRK1 gene fusions were either previously described or obtained from the TCGA Fusion gene Data Portal (http://www.tumorfusions.org). The Oncoprint for the copy number alterations of the TSG and PDGFR genes (Supplementary FigureĀ ) were downloaded from the cBioportal (http://www.cbioportal.org). All the other data […]

library_books

Novel kinase fusion transcripts found in endometrial cancer

2015
Sci Rep
PMCID: 4687039
PMID: 26689674
DOI: 10.1038/srep18657

[…] ion transcript that could result in a functional protein. As of May 1, 2015, only 26 of 124 cancer-specific fusion transcripts were previously reported in the TCGA Fusion Gene Data Portal (http://www.tumorfusions.org) ( and ).To visualize the fusion-gene profile for each cell line, we used circos plots to represent the fusion events. Based on Genomic Identification of Significant Targets in Cancer […]

TumorFusions institution(s)
Department of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; Program in Bioinformatics and Biostatistics, The University of Texas Graduate School of Biomedical Sciences, Houston, TX, USA; Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA; The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA; Department of Obstetrics and Gynecology, Niigata University Graduate School of Medical and Dental Sciences, Niigata, Japan; Department of Neuro-Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA
TumorFusions funding source(s)
Supported by National Institutes of Health [R01CA19012, R21 CA198320, P50CA127001]; Cancer Prevention and Research Institute of Texas [R140606]; Cancer Center Support Grants [P30CA16672, P30CA034196].

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