Tute Genomics statistics

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Tute Genomics specifications

Information


Unique identifier OMICS_01223
Name Tute Genomics
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Parallelization MapReduce
Computer skills Advanced
Stability Stable
High performance computing Yes
Maintained No

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Tute Genomics in publications

 (7)
PMCID: 5706401
PMID: 29183403
DOI: 10.1186/s13073-017-0486-1

[…] evidence. linkage evidence from each pedigree was considered independently., variants within the one lod interval of the maximum linkage score were analyzed using the ingenuity variant analysis and tute genomics analysis programs (https://www.qiagenbioinformatics.com/products/ingenuity-variant-analysis/). for the ingenuity variant analysis we used version 3.0.20140422 with content versions […]

PMCID: 5322674
PMID: 28228131
DOI: 10.1186/s12920-017-0246-5

[…] for variants that were considered as pathogenic, probably-pathogenic, mixed, or drug-response in the clinvar database. lastly, the vcf files were also uploaded to the omicia opal platform and the tute genomics platform for online annotation, filtering, and pharmacogenomic analysis. the tute genomics variant interpretation report for each individual can be found in additional file ., clinical […]

PMCID: 5111005
PMID: 27900361
DOI: 10.1101/mcs.a001131

[…] for all individuals in the family are described in , and coverage and mapping statistics are shown in . these analyses included in-house protocols and several commercial software packages including tute genomics, omicia opal, and cartagenia v4.1, along with the use of an otg-snpcaller pipeline (see methods). the various analyses do provide a more comprehensive and in-depth approach to the data, […]

PMCID: 5111007
PMID: 27900360
DOI: 10.1101/mcs.a001073

[…] all individuals in the family are described in , and coverage and mapping statistics are shown in . these analyses included in-house protocols, and several commercial software packages, including tute genomics, omicia opal, and cartagenia v4.1, along with the use of the otg-snpcaller pipeline (see methods). in all analyses, we arrived at similar conclusions, but the various analyses helped […]

PMCID: 4931320
PMID: 27356984
DOI: 10.1038/ncomms12065

[…] j.hu and d.w. are employees of nextomics biosciences. g.j.l. serves on the advisory boards of omicia, inc., genepeeks, inc. and good start genetics, inc. k.w. is a board member and shareholder of tute genomics, inc. and nextomics biosciences. e.e.e. is on the scientific advisory board of dnanexus, inc. and is a consultant for kunming university of science and technology (kust) as part […]


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