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Tuxedo | Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Handles RNA-sequencing pipeline that is based on TopHat suite. The Tuxedo protocol allows to assess alternative splicing inferred on fragments per kilobase per million (FPKM) values.

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Tuxedo classification

Tuxedo specifications

Unique identifier:
OMICS_01415
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable
Software type:
Pipeline/Workflow
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes

Tuxedo distribution

versioning

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No versioning.

Tuxedo support

Maintainer

  • Sunetra Das <>

Credits

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Publications

Institution(s)

Department of Biology, Colorado State University, CO, USA; Department of Biology, University of Oklahoma, Norman, OK, USA

Funding source(s)

Supported by National Science Foundation (grant IOS-1551003); the Society for Integrative and Comparative Biology, the SICB Division of Comparative Physiology and Biochemistry, and The Crustacean Society.

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