tweeDEseq specifications

Information


Unique identifier OMICS_02406
Name tweeDEseq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C, R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.26.0
Stability Stable
Requirements
limma, parallel, edgeR, MASS, xtable, R(>=2.12.0), cqn, tweeDEseqCountData
Maintained Yes

Download


download.png

Versioning


No version available

Documentation


Maintainers


  • person_outline mesnaola
  • person_outline Robert Castelo
  • person_outline Juan González

Publication for tweeDEseq

tweeDEseq citation

library_books

Regulatory and evolutionary signatures of sex biased genes on both the X chromosome and the autosomes

2017
PMCID: 5668987
PMID: 29096703
DOI: 10.1186/s13293-017-0156-4

[…] We used the R package TweeDESeq [] to compare gene expression between males and females. TweeDESeq first normalizes the raw counts of RNA-Seq reads, and then fits the RNA-Seq count data to a family of flexible distribution […]

tweeDEseq institution(s)
Center for Research in Environmental Epidemiology (CREAL), Barcelona, Spain; Department of Mathematics, Universitat Autònoma de Barcelona (UAB), Barcelona, Spain; Center for Genomic Regulation (CRG), Barcelona, Spain; Department of Experimental and Health Sciences, Research Program on Biomedical Informatics (GRIB), Universitat Pompeu Fabra, Barcelona, Spain; Hospital del Mar Research Institute (IMIM), Barcelona, Spain; CIBER Epidemiology and Public Health (CIBERESP), Barcelona, Spain
tweeDEseq funding source(s)
Supported by grants from the ‘Ministerio de Ciencia e Innovación - MICINN’ (MTM2011-26515, MTM2010-09526-E, MTM2009-10893 and TIN2011-22826), from European Reseach Council, Breathe project, ERC-AdG, and GA num. 268479.

tweeDEseq reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review tweeDEseq