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Twine specifications


Unique identifier OMICS_09859
Name Twine
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes


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  • person_outline Stephen T. Crews

Publication for Twine

Twine citation


Most of the tight positional conservation of transcription factor binding sites near the transcription start site reflects their co localization within regulatory modules

BMC Bioinformatics
PMCID: 5117513
PMID: 27871221
DOI: 10.1186/s12859-016-1354-5

[…] but few such programs exist (emcmodule, []). instead, most newer programs combine phylogeny and possibly other information with tfbs patterns, either with consistent positioning (stubb []; emma []; twine []) or without it ([]; phylocon []; cisplusfinder []; cistargetx [, ]). programs searching a single genome for the consistent positional preferences within rms are therefore surprisingly rare […]

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Twine institution(s)
Department of Biochemistry and Biophysics, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Program in Molecular Biology and Biotechnology, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA

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