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Twine specifications

Information


Unique identifier OMICS_09859
Name Twine
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Stephen T. Crews

Publication for Twine

Twine citation

library_books

Most of the tight positional conservation of transcription factor binding sites near the transcription start site reflects their co localization within regulatory modules

2016
BMC Bioinformatics
PMCID: 5117513
PMID: 27871221
DOI: 10.1186/s12859-016-1354-5

[…] but few such programs exist (emcmodule, []). instead, most newer programs combine phylogeny and possibly other information with tfbs patterns, either with consistent positioning (stubb []; emma []; twine []) or without it ([]; phylocon []; cisplusfinder []; cistargetx [, ]). programs searching a single genome for the consistent positional preferences within rms are therefore surprisingly rare […]


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Twine institution(s)
Department of Biochemistry and Biophysics, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Program in Molecular Biology and Biotechnology, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA

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