tximport specifications

Information


Unique identifier OMICS_11762
Name tximport
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.1
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Charlotte Soneson <>

tximport article

tximport citation

2017
PMCID: 5691074

[…] rrna and mrna sequences with an additional 50 adenine residues added to the 3′-ends to allow mapping of polya tails. gene-level counts were imported and analyzed for differential expression with tximport v1.4.053 and deseq2 v1.16.1. coverage profiles for each mitochondrial transcript were generated from full fragment bed files with bedtools v2.26.041., all the data needed to evaluate […]

tximport institution(s)
Institute for Molecular Life Sciences, University of Zurich, Zurich, Switzerland; SIB Swiss Institute of Bioinformatics, University of Zurich, Zurich, Switzerland; Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA, USA; Department of Biostatistics, Harvard TH Chan School of Public Health, Boston, MA, USA
tximport funding source(s)
This work was supported by the “RNA & Disease” National Center of Competence in Research, an SNSF project grant (143883) by the European Commission through the 7th Framework Collaborative Project RADIANT (Grant Agreement Number: 305626), and by NIH grant 5T32CA009337-35.

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