U50 specifications


Unique identifier OMICS_17631
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Two input files are needed from the user: a multi-FASTA file containing all the contigs and a FASTA file including only the reference genome.
Input format FASTA
Operating system Unix/Linux
Programming languages Python, Shell (Bash)
License Apache License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes



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U50 article

U50 institution(s)
Oak Ridge Institute for Science and Education, Oak Ridge, TN, USA; Division of Viral Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
U50 funding source(s)
This work was supported by Federal appropriations to the Centers for Disease Control and Prevention (CDC), through the Advanced Molecular Detection Initiative line item. This research was also supported in part by an appointment to the Research Participation Program at the CDC administered by the Oak Ridge Institute for Science and Education through an interagency agreement between the U.S Department of Energy and CDC.

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