U50 specifications
- Unique identifier:
- OMICS_17631
- Interface:
- Command line interface
- Input data:
- Two input files are needed from the user: a multi-FASTA file containing all the contigs and a FASTA file including only the reference genome.
- Operating system:
- Unix/Linux
- License:
- Apache License version 2.0
- Stability:
- Stable
- Software type:
- Package/Module
- Restrictions to use:
- None
- Input format:
- FASTA
- Programming languages:
- Python, Shell (Bash)
- Computer skills:
- Advanced
- Maintained:
- Yes
versioning
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free
to upload your code and get a DOI
No versioning.
U50 distribution
download
forum
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free
to ask question and share your advices
No open topic.
Credits
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free
to badge your contributorship
Publications
-
(Castro and Ng, 2017)
U50: A New Metric for Measuring Assembly Output Based on Non-Overlapping, Target-Specific Contigs.
J Comput Biol.
DOI: 10.1089/cmb.2017.0013
Institution(s)
Oak Ridge Institute for Science and Education, Oak Ridge, TN, USA; Division of Viral Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
Funding source(s)
This work was supported by Federal appropriations to the Centers for Disease Control and Prevention (CDC), through the Advanced Molecular Detection Initiative line item. This research was also supported in part by an appointment to the Research Participation Program at the CDC administered by the Oak Ridge Institute for Science and Education through an interagency agreement between the U.S Department of Energy and CDC.
User review
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free
to join and share with the community
0 user reviews
0 user reviews
No review has been posted.
