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U50 specifications
Information
| Unique identifier | OMICS_17631 |
|---|---|
| Name | U50 |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Input data | Two input files are needed from the user: a multi-FASTA file containing all the contigs and a FASTA file including only the reference genome. |
| Input format | FASTA |
| Operating system | Unix/Linux |
| Programming languages | Python, Shell (Bash) |
| License | Apache License version 2.0 |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
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Publication for U50
library_books
U50: A New Metric for Measuring Assembly Output Based on Non-Overlapping, Target-Specific Contigs.
2017 J Comput Biol
PMCID: 5783553
PMID: 28418726
DOI: 10.1089/cmb.2017.0013
U50 institution(s)
Oak Ridge Institute for Science and Education, Oak Ridge, TN, USA; Division of Viral Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA
U50 funding source(s)
This work was supported by Federal appropriations to the Centers for Disease Control and Prevention (CDC), through the Advanced Molecular Detection Initiative line item. This research was also supported in part by an appointment to the Research Participation Program at the CDC administered by the Oak Ridge Institute for Science and Education through an interagency agreement between the U.S Department of Energy and CDC.
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