UALCAN statistics

You need an account to access this content

info

Citations per year

Citations chart
info

Popular tool citations

chevron_left TCGA data processing Prognostic biomarker identification chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

UALCAN specifications

Information


Unique identifier OMICS_19769
Name UALCAN
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Sooryanarayana Varambally <>

Publication for UALCAN

UALCAN in pipeline

2018
PMCID: 5896649
PMID: 29670400
DOI: 10.2147/CMAR.S162813

[…] (ppi) network based on the string website and the cytoscape software was constructed. weighted correlation network analysis (wgcna) was utilized to build the coexpression network. subsequently, ualcan websites were employed to conduct survival analysis. finally, the oncomine database was used to validate the expression of anln in other datasets., gse29570 and gse89657, including 49 cervical […]

UALCAN in publications

 (5)
PMCID: 5945649
PMID: 29748619
DOI: 10.1038/s41598-018-25798-7

[…] relevant guidelines and regulations., mrna expression and clinical data for eif4g1 and eif4e from tcga (the cancer genome atlas) data set for the prostate cancer and normal samples were analyzed by ualcan (http://ualcan.path.uab.edu/) web server and tcga database. the analysis was done on 497 primary tumors of prostate cancer and 52 normal samples from tcga. using a gene name (or more), the web […]

PMCID: 5932758
PMID: 29720215
DOI: 10.1186/s13058-018-0963-5

[…] and esr1 mrna levels in breast cancer cell lines (fig. ). also, analyses of the cancer genome atlas (tcga) dataset for the relationship between unc5a expression and breast cancer subtypes using the ualcan program [] revealed highest unc5a expression in luminal breast cancers, which are usually erα-positive, compared with tnbcs (fig. ). in contrast, ntn1 expression was higher in tnbcs compared […]

PMCID: 5896649
PMID: 29670400
DOI: 10.2147/CMAR.S162813

[…] (ppi) network based on the string website and the cytoscape software was constructed. weighted correlation network analysis (wgcna) was utilized to build the coexpression network. subsequently, ualcan websites were employed to conduct survival analysis. finally, the oncomine database was used to validate the expression of anln in other datasets., gse29570 and gse89657, including 49 cervical […]

PMCID: 5832105
PMID: 29666643
DOI: 10.1155/2018/2439527

[…] high classification stringency was used., to access tumor subgroup gene expression and survival data in the cancer genome atlas (tcga) project, we used the web interface of ualcan [] and part of the processed data from ualcan. ualcan uses tcga level 3 rna-seq and clinical data from 33 cancer types. the expression level was normalized as transcripts per million reads […]

PMCID: 5793169
PMID: 29300342
DOI: 10.3390/genes9010016

[…] these are summarized in ., oncomine, a cancer microarray data-mining platform, is helpful for individual researchers to obtain gene expression signatures in human cancer tissues and cells []. ualcan is an interactive and user-friendly web resource for the analysis of cancer transcriptomic data []. the human protein atlas project enables users to create a map of protein expression patterns […]

UALCAN institution(s)
Molecular and Cellular Pathology, Department of Pathology, University of Alabama, Birmingham, AL, USA; Comprehensive Cancer Center, University of Alabama, Birmingham, AL, USA; Department of Medicine, Dan L. Duncan Comprehensive Cancer Center, and Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA
UALCAN funding source(s)
Supported by The University of Alabama Birmingham and Breast Cancer Research Foundation of Alabama, NIH/NCI [R01CA157845, R01CA154980], and NIH CA125123.

UALCAN reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review UALCAN