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UbiProber specifications

Information


Unique identifier OMICS_05547
Name UbiProber
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Publication for UbiProber

UbiProber in publications

 (8)
PMCID: 5799804
PMID: 29371697
DOI: 10.1038/emm.2017.247

[…] sites, based on the three-dimensional structure of rps3 (protein data bank id: 3kc4) and prediction results from the ubiquitination prediction database (phosphositeplus, ubpred, iubiq-lys and ubiprober), we mutated six lys residues (k10, k90, k151, k202, k214 and k227) to ala and measured radiation-induced poly-ubiquitination (). this analysis revealed a ubiquitin modification of rps3 […]

PMCID: 5467854
PMID: 28604779
DOI: 10.1371/journal.pone.0176533

[…] modification in this parasite. notably, some of the p. chabaudi experimentally detected ubiquitinated proteins were not predicted in silico by the available software such as ubpred or ubiprober, suggesting that the recognition elements could be species-specific., as in other plasmodium species, p. chabaudi has three genes related to ubiquitin and its polyubiquitin sequence […]

PMCID: 5314637
PMID: 28212611
DOI: 10.1186/s12864-017-3534-8

[…] snp influence in post-translational modifications (ptm) several programs were used, namely for phosphorylation, sumoylation, ubiquitination and methylation: netphos 2.0 [], sumoplotâ„¢, ubpred [] and ubiprober [] and memo 2.0 [] were used, respectively., a soxhlet extraction was performed from leaves of the 20 individuals representative of haplotypes diversity (indicated in grey in additional […]

PMCID: 5095052
PMID: 27175591
DOI: 10.18632/oncotarget.9235

[…] the k333 site using proteomic discovery-mode mass spectrometry, thus strengthening the likelihood of a true ubiquitination site [, ]. in parallel, we used three additional bioinformatics tools (ubiprober, ubpred, bdm-pub) and identified 13 candidate ubiquitination sites, including the k333 site previously predicted by discovery-mode mass spectrometry (table ) [–]. by looking at the position […]


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UbiProber institution(s)
Department of Chemistry, Nanchang University, Nanchang, China

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