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Ubiquitination site prediction software tools | Post-translational modification analysis

Protein ubiquitination is one of the most important reversible post-translational modifications (PTMs). In many biochemical, pathological and pharmaceutical studies on understanding the function of proteins in biological processes, identification of…
UbiSite
Web

UbiSite

Allows users to identify lysine ubiquitylation sites based on…

Allows users to identify lysine ubiquitylation sites based on MDDLogo-identified substrate motifs. UbiSite permits users to submit their protein sequences through a web-based interface. This tool…

ESA-UbiSite
Web

ESA-UbiSite

Identifies human ubiquitination sites. The main concept of this ESA follows the…

Identifies human ubiquitination sites. The main concept of this ESA follows the principle of natural selection, i.e. survival of the fittest in a changing environment. The identification of putative…

PhosphOrtholog
Web

PhosphOrtholog

Enables mapping of thousands of novel and known protein phosphorylation sites…

Enables mapping of thousands of novel and known protein phosphorylation sites across species, accessible through an easy-to-use web interface. This is achieved through pairwise sequence alignment of…

PTMProber
Web

PTMProber

A homology-based pipeline that allows identification of potential modification…

A homology-based pipeline that allows identification of potential modification sites for most of the proteomes lacking post-translational modifications (PTMs) data. PTMProber provides a unique…

iUbiq-Lys
Web

iUbiq-Lys

A web server that could predict ubiquitination sites in proteins. With the…

A web server that could predict ubiquitination sites in proteins. With the assistance of SVM, the highlight of iUbiq-Lys is to employ amino acid sequence features extracted from the sequence…

UbiProber
Web

UbiProber

Designed for large-scale predictions of both general and species-specific…

Designed for large-scale predictions of both general and species-specific ubiquitylation sites.

UbPred
Web

UbPred

A random forest-based predictor of potential ubiquitination sites in proteins.

A random forest-based predictor of potential ubiquitination sites in proteins.

UbiPred
Web

UbiPred

An informative physicochemical property mining algorithm for mining informative…

An informative physicochemical property mining algorithm for mining informative physicochemical properties from protein sequences to build an SVM-based prediction system. UbiPred can predict…

hCKSAAP_UbSite
Web

hCKSAAP_UbSite

A human-specific ubiquitination site predictor through the integration of…

A human-specific ubiquitination site predictor through the integration of multiple complementary classifiers. Firstly, a Support Vector Machine (SVM) classier was constructed based on the composition…

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