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UCLUST | Search and clustering orders of magnitude

A clustering method that exploits USEARCH to assign sequences to clusters. UCLUST is superior to CD-HIT. It is usually significantly faster, uses significantly less memory, can cluster at lower identities and is more sensitive. While CD-HIT often fails to identify the closest cluster, or overlooks that a match is possible (false negative), UCLUST rarely misses a match and in most cases finds the best possible match. UCLUST also enables rapid clustering of much larger numbers of sequences.

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UCLUST forum

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UCLUST classification

UCLUST specifications

Unique identifier:
OMICS_01448
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable
Wikipedia:
https://en.wikipedia.org/wiki/UCLUST
Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes

UCLUST distribution

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No versioning.

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Publications

Institution(s)

Tiburon, CA, USA

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