Protocols

UCNEbase specifications

Information


Unique identifier OMICS_09641
Name UCNEbase
Restrictions to use None
Maintained Yes

Maintainer


  • person_outline Philipp Bucher

Publications for UCNEbase

UCNEbase citations

 (2)
library_books

Scalable Design of Paired CRISPR Guide RNAs for Genomic Deletion

2017
PLoS Comput Biol
PMCID: 5333799
PMID: 28253259
DOI: 10.1371/journal.pcbi.1005341

[…] Pre-miRNAs were obtained from miRBASE []. Disease-associated SNPs were obtained from the GWAS database (http://www.ebi.ac.uk/gwas/api/search/downloads/full). Ultraconserved regions were obtained from UCNEbase []. For human positive and negative masks we used DNaseI hypersensitive sites identified through genome-wide profiling in 125 diverse cell and tissue types by the ENCODE consortium [] and Rep […]

call_split

Kiwi genome provides insights into evolution of a nocturnal lifestyle

2015
Genome Biol
PMCID: 4511969
PMID: 26201466
DOI: 10.1186/s13059-015-0711-4
call_split See protocol

[…] mino acid changes with signs of selection and specific for the kiwi were visualized in both sequenced individuals.Chicken UCNEs annotations were downloaded from the ultra-conserved non-coding element UCNEbase []. Orthologous regions in Apteryx mantelli and Struthio camelus, Tinamus guttatus, Tyto alba, Antrostomus carolinensis genomes, downloaded from GigaDB [], and birds from Ensembl 74 [] Ficedu […]

UCNEbase institution(s)
Swiss Institute for Experimental Cancer Research (ISREC), School of Life Sciences, Swiss Federal Institute of Technology (EPFL); Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland
UCNEbase funding source(s)
The Swiss National Science Foundation [PDFM33-120719]

UCNEbase reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review UCNEbase