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UITagCreator

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A process for the creation of library tags that increases accuracy in identification of the source tissue with little processing time overhead. UITagCreator also identifies the tissue of origin utilizes a synthetic oligonucleotide tag to uniquely identify the source tissue from which the clone was derived. The algorithm utilizes the LDA to determine the edit distance between pairs of tags, and implements a linear-feedback shift register (LFSR) to quickly perform an exhaustive pseudo-random search of each candidate tag.

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UITagCreator classification

UITagCreator specifications

Software type:
Package/Module
Restrictions to use:
None
Output data:
Set of tissue identification tags with similar error detection and correction properties
Programming languages:
C
Version:
1.9
Maintained:
Yes
Interface:
Command line interface
Input data:
Tag length, edit distance, and Hamming distance
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable

UITagCreator distribution

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UITagCreator support

Documentation

Maintainer

  • Tom Casavant <>

Credits

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Publications

Institution(s)

Departments of Electrical and Computer Engineering, Pediatrics and Physiology and Biophysics, The University of Iowa, Iowa City, IA, USA

Funding source(s)

This work was supported in part by NIH grant 2R01HL59789 and by a NIH training grant GMO8629-04.

Link to literature

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