Allows users to analyze conserved genomic loci. PHYLUCE is designed to perform different tasks: (1) assemble the sequencing reads; (2) identify putative orthologs among the assembled contigs; (3) generate datasets that contain different individuals; (4) detect and export sequence data from orthologs across all individuals in the set; (5) or align the data and optionally trim resulting alignments in preparation for phylogenetic inference.
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