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UNC Microarray Database specifications

Information


Unique identifier OMICS_00872
Name UNC Microarray Database
Alternative name University of North Carolina Microarray Database
Restrictions to use None
Maintained Yes

UNC Microarray Database citations

 (7)
library_books

RUNX1 prevents oestrogen mediated AXIN1 suppression and β catenin activation in ER positive breast cancer

2016
Nat Commun
PMCID: 4773428
PMID: 26916619
DOI: 10.1038/ncomms10751

[…] Genomics Browser ( http://genome-cancer.ucsc.edu) as ranked expression scores. Expression microarray data and RUNX1 mutation status of 209 ER+ tumours described by Ellis et al. was obtained from the University of North Carolina Microarray Database. […]

library_books

A computational model to predict bone metastasis in breast cancer by integrating the dysregulated pathways

2014
BMC Cancer
PMCID: 4161863
PMID: 25163697
DOI: 10.1186/1471-2407-14-618

[…] We have downloaded gene expression profiles of breast cancer patients along with the clinical information from UNC microarray database []. The downloaded data consists of four microarray data sets: GSE2034 [], GSE2603 [], GSE12276 [] and NKI295 [], and has been processed and normalized by the original paper [] […]

library_books

Comprehensive literature review and statistical considerations for microarray meta analysis

2012
Nucleic Acids Res
PMCID: 3351145
PMID: 22262733
DOI: 10.1093/nar/gkr1265

[…] tained 22 170 data series and 546 633 samples. Several other databases are housed in specific universities or groups, including Stanford Microarray Database (SMD), caArray at NCI, UPenn RAD Database, UNC Microarray Database, Yale Microarray Database, MUSC Database and UPSC-BASE. These websites are considered primary databases, where the main purpose is to provide downloadable and searchable microa […]

library_books

An In Vitro Model That Recapitulates the Epithelial to Mesenchymal Transition (EMT) in Human Breast Cancer

2011
PLoS One
PMCID: 3039655
PMID: 21347235
DOI: 10.1371/journal.pone.0017083

[…] package and differential gene expression assessed using Significance Analysis of Microarrays (SAM) within the siggenes package. The dataset from Hershkowitz and colleagues was downloaded from the UNC Microarray Database (https://genome.unc.edu/). RNA from the collagen invasion assays was labelled using a Illumina TotalPrep RNA amplification kit (Ambion) according to manufacturer's instructions […]

library_books

Potential Tumor Suppressor Role for the c Myb Oncogene in Luminal Breast Cancer

2010
PLoS One
PMCID: 2951337
PMID: 20949095
DOI: 10.1371/journal.pone.0013073

[…] All raw data from microarrays performed at the University of North Carolina are MIAME compliant and publically available at both the UNC Microarray Database [http://genome.unc.edu] as well as the Gene Expression Omnibus (GSE21371). Poly-A(+) RNA was collected (Invitrogen, Micro-FastTrack2.0 mRNA Isolation Kit) from six replicates o […]

call_split

A gene on the HER2 amplicon, C35, is an oncogene in breast cancer whose actions are prevented by inhibition of Syk

2010
Br J Cancer
PMCID: 2920017
PMID: 20628393
DOI: 10.1038/sj.bjc.6605763
call_split See protocol

[…] within the bead array package () and differential gene expression was assessed using significance analysis of microarrays (SAM; ) using the siggenes package. The data set of ) was downloaded from the UNC Microarray Database (https://www.genome.unc.edu/).Confirmation of gene expression patterns from biological triplicates of invasion assays was carried out using the QuantiTect SYBR Green kit (Corbe […]

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