Generates training sets for Post-translational modification (PTM) site prediction methods. iPTMnet is an online resource that aims to develop an integrative bioinformatics framework for PTM discovery, connecting enzyme-substrate relationships, major PTMs that may work in concert, PTM forms to biological contexts and across taxons. This database allows users to search, browse, review results interactively, visualize PTM in protein networks and pathway maps, conduct use cases.
Supports manual validation of post-translational modifications (PTMs) and their relative quantitation in small- and medium-size experiments. MsViz can display thanks to its interactive interface with the peptide spectrum matches, sequence coverage information, or tandem mass spectrometry (MS/MS) spectra and extracted ion chromatograms through a single. It allows easy and comprehensive visualization of small and medium bottom-up proteomics datasets.
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