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PO / Plant Ontology
Produces structured controlled vocabularies, arranged in ontologies, that can be applied to plant-based database information even as knowledge of the biology of the relevant plant taxa is accumulating and changing. Plant Ontology brings an integrated approach of adopting common annotation standards and a set of reference ontologies for Plants. The project is a heavily collaborative project that depends on coordination with several national and international projects.
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SELEX_DB
Provides experimental data on in vitro selected DNA/RNA oligomers (aptamers) and the applets for recognition of these oligomers. SELEX_DB stores selected affinity-enriched sequences from different combinatorial libraries. The database is supplemented by two databases, SYSTEM and CROSS_TEST, storing both the experimental systems and their cross-validation tests. It includes reference to the literature source with SELEX_BIB database and SELEX_TOOLS, the recognition applet package.
HTS-DB / High-Throughput Screening Database
Tracks and stores projects, screens, assays, cell lines and library information. HTS-DB provides full data tracking, interactive data visualization and analysis and comparison of screening results both within projects and between different projects. It also provides a repository for additional measurements obtained from screens that were not the focus of the project, such as cell viability, and groups these data so that it can provide a gene-centric summary across several different cell lines and conditions.
CHESS / Comprehensive Human Expressed SequenceS
New
Gathers more than 43000 human genes about 320000 transcripts. CHESS is a repository which proposes five downloadable files displaying: (i) a set for gene annotation aligned according human genome release GRCh38.p8; (ii) a gene list of the complete database with additional features; (iii) a FASTA file including the sequences of the censused proteins; (iv) a modified annotation file limited to reference chromosomes and mitochondrion; and (v) a set of annotation enriched by data from RefSeq.
RiboaptDB
Obsolete
Aims to collect all ribozyme and aptamer sequences and their detailed and correct annotation. RiboaptDB provides users with a web interface with flexibility to select either ribozyme or aptamer sequences and to browse the corresponding information. It allows online sequence submission to the database. This repository can be useful for identifying available aptamers and artificial ribozymes, for acquiring information about in vitro selection experiment, and for better understanding the distribution of functional nucleic acids in the given sequence space.
Aptamer Base
Obsolete
Provides structured and detailed information about the experimental conditions under which aptamers were selected and their binding affinity quantified. Aptamer Base is an open collaborative database with a unique resource that can be updated and curated in a decentralized manner, thereby accommodating the ever evolving filed of aptamer research. Aptamer Base describes the pH, temperature, salt concentrations and the buffering agent for all systematic evolution of ligands by exponential enrichment (SELEX) experiments.

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