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Unclassified databases | Immunoinformatics

AFND
Dataset

AFND Allele Frequency Net Database

Contains several data about frequency data. AFND provides a central source for…

Contains several data about frequency data. AFND provides a central source for the storage of allele frequencies from different polymorphic areas in the Human Genome. One of the purpose of this…

VBASE2
Dataset

VBASE2

Provides germ-line V genes from the immunoglobulin (Ig) loci of human and…

Provides germ-line V genes from the immunoglobulin (Ig) loci of human and mouse. VBASE2 is an integrative database that contains Ig germline V genes from the heavy chain and lambda and kappa light…

bNAber
Dataset

bNAber

Provides open, user-friendly access to detailed data on the rapidly growing…

Provides open, user-friendly access to detailed data on the rapidly growing list of HIV broadly neutralizing antibodies (bNAbs), including neutralization profiles, sequences and three-dimensional…

HCV sequence…
Dataset

HCV sequence database

Strives to present HCV-associated, hand-annotated genetic data in a…

Strives to present HCV-associated, hand-annotated genetic data in a user-friendly way, by providing access to the central database via web-accessible search interfaces and supplying a number of…

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BloodSpot
Dataset

BloodSpot

Provides an expression plot of genes in healthy and cancerous haematopoietic…

Provides an expression plot of genes in healthy and cancerous haematopoietic cells at specific differentiation stages. BloodSpot facilitates the easy assessment of gene-expression data and how this…

BGMUT
Dataset

BGMUT Blood Group Antigen Gene Mutation Database

Provides information about antigen gene mutation. BGMUT contains documents…

Provides information about antigen gene mutation. BGMUT contains documents concerning antigens for human blood groups. This database is a part of the dbRBC resource of the National Center for…

Protegen
Dataset

Protegen Protective antigens

A web-based central database and analysis system that curates, stores, and…

A web-based central database and analysis system that curates, stores, and analyzes protective antigens.

Lym1K
Dataset

Lym1K

Hosts a collection of immune receptor alleles that combines known,…

Hosts a collection of immune receptor alleles that combines known, well-supported alleles with novel alleles found in the 1000 Genomes Project data. Lym1K leads to a significant improvement in the…

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ImmuCo
Dataset

ImmuCo

A cell-specific database that contains information about gene co-expression in…

A cell-specific database that contains information about gene co-expression in immune cells, identifying co-expression and correlation between any two genes. The strength of co-expression of queried…

SuperHapten
Dataset

SuperHapten

A manually curated hapten database integrating information from literature and…

A manually curated hapten database integrating information from literature and web resources. The haptens are classified regarding their origin: pesticides, herbicides, insecticides, drugs, natural…

hivmut
Dataset

hivmut HIV Mutation

A database of mutagenesis and mutation information on Human Immunodefiency…

A database of mutagenesis and mutation information on Human Immunodefiency Virus (HIV). Hivmut describes the phenotypes of 7,608 unique mutations at 2,520 sites in the HIV proteome, resulting from…

AB-Bind
Dataset

AB-Bind Antibody Binding Mutational Database

Reports a diverse set of antibody binding data with accompanying structures…

Reports a diverse set of antibody binding data with accompanying structures that can be used to evaluate methods for modeling antibody interactions. AB-Bind includes 1101 mutants with experimentally…

Gene…
Dataset

Gene Expression in Neutrophil-like Cell Lines

Gathers information about gene expression. Gene Expression in Neutrophil-like…

Gathers information about gene expression. Gene Expression in Neutrophil-like Cell Lines is a database that is searchable by gene name and by protein domain content. With this platform, users can…

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ImmunemiR
Dataset

ImmunemiR

Allows users to get information about prioritized immune miRNA disease…

Allows users to get information about prioritized immune miRNA disease associations. ImmunemiR gathers miRNAs specific to inflammation, autoimmune diseases and cancer. It includes a set of 245 immune…

dAUTObase
Dataset

dAUTObase

Collects an ever increasing number of publications on autoimmune diseases'…

Collects an ever increasing number of publications on autoimmune diseases' frequencies in various populations and ethnic groups. The respective data have been hosted by a web application…

ImmGen
Dataset

ImmGen Immunological Genome Project

Aims to decipher the gene networks underpinning mouse hematopoiesis. The immune…

Aims to decipher the gene networks underpinning mouse hematopoiesis. The immune transcriptome compendium has revealed unsuspected cell lineage relations and the network reconstruction has identified…

DFRMLI
Dataset

DFRMLI Dana-Farber Repository for Machine Learning in Immunology

This data repository bridges the gap between immunological and computer…

This data repository bridges the gap between immunological and computer science/machine learning communities by providing preprocessed and scaled immunological data sets suitable for use in machine…

Vaxar
Dataset

Vaxar Vaccine Animal Responses

Serves as a web-based central repository of vaccine animal-response data. Vaxar…

Serves as a web-based central repository of vaccine animal-response data. Vaxar is a one-stop resource for vaccine animal responses that combines online data curation, storage, and review with public…

PCRP
Dataset

PCRP Protein Capture Reagents Program

Generates protein affinity reagents to a large number of human transcription…

Generates protein affinity reagents to a large number of human transcription factors. PCRP consists of three core centers: antigen production, traditional monoclonal antibody (mAb) production, and…

FLAVIdB
Dataset

FLAVIdB Flavivirus Database

A database that combines antigenic data of flaviviruses, specialized analysis…

A database that combines antigenic data of flaviviruses, specialized analysis tools, and workflows for automated complex analyses focusing on applications in immunology and vaccinology. FLAVIdB…

IL2RGbase
Dataset

IL2RGbase

A database of gamma c-chain defects causing human X-linked severe combined…

A database of gamma c-chain defects causing human X-linked severe combined immunodeficiency.

HIVToolbox
Dataset

HIVToolbox

A web system for visual data mining. The original HIVToolbox integrated…

A web system for visual data mining. The original HIVToolbox integrated information for HIV protein sequence, structure, functional sites, and sequence conservation. HIVToolbox2 has new…

ECODAB
Dataset

ECODAB Escherichia coli O-antigen Database

Emphasizes the particularities of known E. coli serogroups and facilitates the…

Emphasizes the particularities of known E. coli serogroups and facilitates the identification of common epitopes. ECODAB is an online resource containing collection of E. coli O-antigen structures,…

VaccineDA
Dataset

VaccineDA

Adjuvants play a vital role in immunization particularly in case of…

Adjuvants play a vital role in immunization particularly in case of epitope-based vaccines. VaccineDA has been made available to the scientific community as a webserver in order to assist the…

ImmuSort
Dataset

ImmuSort

A freely available database on gene plasticity and electronic sorting for…

A freely available database on gene plasticity and electronic sorting for immune cells. Gene plasticity is defined as the extent of the change in a gene’s expression in response to various…

EpiCombFlu
Web

EpiCombFlu

Available data on strains, proteins, epitopes and their associated information…

Available data on strains, proteins, epitopes and their associated information were used to develop a Web resource which can explore different influenza epitopes and their combinations for…

RefDIC
Dataset

RefDIC Reference genomics Database of Immune Cells

An open-access database of quantitative mRNA and protein profiles specifically…

An open-access database of quantitative mRNA and protein profiles specifically for immune cells and tissues. The database currently contains: (i) quantitative mRNA profiles for human and mouse immune…

CytReD
Dataset

CytReD Cytokine Receptor Database

Collects biological information about the human cytokine receptor families and…

Collects biological information about the human cytokine receptor families and their related ligands. CytReD provide a review of cytokine receptors, their ligands, their involvement in diseases and…

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RNAimmuno
Dataset

RNAimmuno

A database designed to collect the published data regarding the nonspecific…

A database designed to collect the published data regarding the nonspecific immunological effects of reagents (e.g., siRNAs, shRNAs, sh-miRs, and anti-miRs) observed in investigated cell lines and…

GPX-MEA
Dataset

GPX-MEA GPX Macrophage Expression Atlas

An online resource for gene expression based studies of a range of macrophage…

An online resource for gene expression based studies of a range of macrophage cell types following treatment with pathogens and immune modulators.

ImmunomeBase
Dataset

ImmunomeBase

A database for metazoan immunity genes and orthologs. All the immunity genes…

A database for metazoan immunity genes and orthologs. All the immunity genes and their evidence of immune function, orthologs and ortholog groups have been combined into an open access database.

AgAbDb
Dataset

AgAbDb Antigen-Antibody Interaction Database

A derived knowledge base, archives molecular interactions of protein and…

A derived knowledge base, archives molecular interactions of protein and peptide antigens characterized by co-crystal structures. The interactions are compiled at two levels, viz. residue level and…

DACS-DB
Dataset

DACS-DB Disease Associated Cytokine SNP Database

Cytokines regulate the immunological activities of lymphocytes, macrophages,…

Cytokines regulate the immunological activities of lymphocytes, macrophages, dendritic cells, neutrophils, basophils, mast cells and other cell types. The DACS-DB database will help cytokine…

IRIS
Dataset

IRIS Immune Response In Silico

A compendium of microarray expression data for virtually all human genes from…

A compendium of microarray expression data for virtually all human genes from six key immune cell types and their activated and differentiated states. IRIS is a collection of genes that have been…

ImmunoBase
Dataset

ImmunoBase

Provides a curated and integrated set of datasets and tools, across multiple…

Provides a curated and integrated set of datasets and tools, across multiple diseases, to support and promote research in this area. ImmunoBase is a web based resource focused on the genetics and…

HITC
Dataset

HITC Human Immunology Project Consortium

Defines profiles, signatures, fingerprints of steady-state and activated human…

Defines profiles, signatures, fingerprints of steady-state and activated human immune system. Through the HITC, well-characterized human cohorts are studied using a variety of modern analytic tools,…

GlycoEpitope
Dataset

GlycoEpitope

A large number of polyclonal or monoclonal antibodies have been used as very…

A large number of polyclonal or monoclonal antibodies have been used as very important tools for analyzing expression of various carbohydrate chains and their functions. In this database, useful…

Cancertope
Dataset

Cancertope

Assists researchers in designing and discovering suitable epitopes/antigens for…

Assists researchers in designing and discovering suitable epitopes/antigens for cancer vaccine/immunotherapy. This workbench takes full advantage of genomic data generated from cancer cell lines over…

dbLRC
Dataset

dbLRC

Provides a publicly accessible platform for DNA sequences and typing reagents…

Provides a publicly accessible platform for DNA sequences and typing reagents related to the human Leukocyte Receptor Complex (LRC), including killer cell immunoglobulin-like receptors (KIR) and…

FIMM
Dataset

FIMM

Contains data relevant to functional molecular immunology, focusing on cellular…

Contains data relevant to functional molecular immunology, focusing on cellular immunology. FIMM contains fully referenced data on protein antigens, major histocompatibility complex (MHC) molecules,…

Cancer-related Immunological Gene Database
Dataset

Cancer-related Immunological Gene Database CIG-DB

Provides a bridge between immunological gene data and cancer studies. The…

Provides a bridge between immunological gene data and cancer studies. The CIG-DB is a semi-automated database that integrates the information on immunoglobulin, T-cell receptor, and epitopes reported…

dbNEI
Dataset

dbNEI database for neuro-endocrine-immune

Collects information about neuro-endocrine-immune (NEI) systems. dbNEI is a…

Collects information about neuro-endocrine-immune (NEI) systems. dbNEI is a manually curated database that compiles data about 1000 NEI related signal molecules and their interactions accompanied by…

CID
Dataset

CID Cancer Immunome Database

A well-organized and professionally curated repository for cancer immunology.…

A well-organized and professionally curated repository for cancer immunology. To reflect the complexity of the knowledge about cancer antigens, the database will be organized in multiple tables,…

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