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Unclassified software | Hi-C data analysis

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CscoreTool
Desktop

CscoreTool

Allows user to infer A/B compartments from Hi-C data. CscoreTool is a…

Allows user to infer A/B compartments from Hi-C data. CscoreTool is a prediction method for A/B compartments that can work on high resolution for dataset. It carries out high-resolution, precise high…

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SHAMAN
Desktop

SHAMAN

Allows users to work on High Chromosome Contact map (Hi-C) analysis at dynamic…

Allows users to work on High Chromosome Contact map (Hi-C) analysis at dynamic scales. SHAMAN is useful to produce randomized matrices conserving empirical number of contacts by restriction fragment…

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HiCtrans
Desktop

HiCtrans

Utilizes chromatin contact maps to identify translocations in cancer cell…

Utilizes chromatin contact maps to identify translocations in cancer cell lines. HiCtrans is a computational method scans fixed-size resolution inter-chromosomal contact maps of each chromosome pair…

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HiCnv
Desktop

HiCnv

Utilizes chromatin contact maps to identify copy number variations (CNVs) in…

Utilizes chromatin contact maps to identify copy number variations (CNVs) in cancer cell lines. HiCnv is a computational method that works on contact counts at the single restriction enzyme (RE)…

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HiCembler
Desktop

HiCembler

Permits users to assemble HiC data.

Permits users to assemble HiC data.

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