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Unclassified software tools | DNA structure analysis

DNATCO
Web

DNATCO

Classifies local conformations of DNA molecules beyond their traditional…

Classifies local conformations of DNA molecules beyond their traditional sorting to A, B and Z DNA forms. DNATCO provides an interface to robust algorithms assigning conformation classes called ntC…

Dolbico
Dataset

Dolbico Database Of Local Biomolecular Conformers

Stores DNA structural data including the information about DNA local spatial…

Stores DNA structural data including the information about DNA local spatial arrangement. The main aim of Dolbico (formely DOLCE) is the exploration of DNA structure at a local level. The analysis of…

DNA…
Web

DNA Sonification

Generates an auditory display from DNA sequence information. DNA Sonification…

Generates an auditory display from DNA sequence information. DNA Sonification allows to apply a sonification algorithm to the selected DNA sequence. Users can apply different sonification algorithms…

banana
Desktop

banana

Plots bending and curvature data for B-DNA. banana predicts bending of a normal…

Plots bending and curvature data for B-DNA. banana predicts bending of a normal B-DNA double helix. The program calculates the magnitude of local bending and macroscopic curvature at each point along…

SIDDBASE
Dataset

SIDDBASE

Provides stress-induced DNA duplex destabilization (SIDD) profiles of microbial…

Provides stress-induced DNA duplex destabilization (SIDD) profiles of microbial genomes. SIDDBASE is a database that gives users an overview of the SIDD sites in their selected genome, and their…

DNAmelt
Desktop

DNAmelt

Allows users to compute melting profiles. DNAmelt is numerically stable for…

Allows users to compute melting profiles. DNAmelt is numerically stable for arbitrary sequence lengths, avoiding underflow problems related to the extensivity of the free energy. It permits users to…

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