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Unclassified software tools | Health/Medical research data

Biologic…
Dataset

Biologic Specimen and Data Repository Information Coordinating Center

Maximizes the scientific value of historical and contemporary NHLBI biospecimen…

Maximizes the scientific value of historical and contemporary NHLBI biospecimen and data collections. BioLINCC facilitates access by qualified researchers to these research resources, and enhances…

PhysioToolkit
Dataset

PhysioToolkit

Permits users to process, analyse and detect physiologically significant events…

Permits users to process, analyse and detect physiologically significant events using both classical techniques and novel methods based on statistical physics and nonlinear dynamics. PhysioToolkit is…

PhysioBank
Dataset

PhysioBank

Stores well-characterized biomedical signals for use by research community.…

Stores well-characterized biomedical signals for use by research community. PhysioBank is an archive providing more than 70 databases. It contains biomedical signals, such as multi-parameter…

DiseaseMeth
Dataset

DiseaseMeth

Presents the most complete collection and annotation of aberrant DNA…

Presents the most complete collection and annotation of aberrant DNA methylation in human diseases, especially various cancers. DiseaseMeth is focused not only on curated information about diseases,…

RALIS
Algorithm

RALIS

Detects systemic inflammatory responses including late onset sepsis (LOS).…

Detects systemic inflammatory responses including late onset sepsis (LOS). RALIS incorporates multiple vital signs monitoring into a predictive algorithm. It is able to detect inflammatory responses…

HMDAD
Dataset

HMDAD human microbe–disease association database

Allows researchers and scientists to find knowledge and clinical solutions for…

Allows researchers and scientists to find knowledge and clinical solutions for disease mechanism understanding, diagnosis and therapy. HMDAD is a database based on microbiota studies in order to…

KORA
Dataset

KORA Kooperative Gesundheitsforschung in der Region Augsburg

Provides recent as well as existing studies with their respective data and…

Provides recent as well as existing studies with their respective data and biosamples. KORA is a research platform that serves as a basis for population-based epidemiological studies on different…

FAIRsharing
Dataset

FAIRsharing

Allows to research informative and educational resource. FAIRsharing is a…

Allows to research informative and educational resource. FAIRsharing is a web-based, searchable portal of three interlinked registries, containing both in-house and crowdsourced manually curated…

GMDPtoolbox
Desktop

GMDPtoolbox

Serves for modeling spatial management problems, for designing and analyzing…

Serves for modeling spatial management problems, for designing and analyzing policies and for comparing given policies by simulation. GMDPtoolbox is a toolbox dedicated to the Graph-Based Markov…

TwoPhaseInd
Desktop

TwoPhaseInd

Implements a number of efficient statistical methods developed for : (i)…

Implements a number of efficient statistical methods developed for : (i) estimating subgroup treatment effects and gene–treatment interactions, (ii) exploiting the gene–treatment independence…

Dual RNA-Seq
Dataset

Dual RNA-Seq

A database of detailed time-resolved dual transcriptomes data. Dual RNA-Seq…

A database of detailed time-resolved dual transcriptomes data. Dual RNA-Seq allows simultaneous monitoring of the transcriptomes of both host and pathogen. We invite pneumococcal researchers to use…

GSTiCluster
Desktop

GSTiCluster

Integrates vertical multi-omics data for disease subtype discovery using…

Integrates vertical multi-omics data for disease subtype discovery using overlapping group lasso and tight clustering in the iCluster latent variable model. GSTiCluster fits a latent variable model…

BodyParts3D
Dataset

BodyParts3D

Stores 3D structure data representing anatomical concepts. BodyParts3D is a…

Stores 3D structure data representing anatomical concepts. BodyParts3D is a dictionary-type database constructed on the framework of a voxel human model for electromagnetic- dosimetry “TARO”. The…

Gene ORGANizer
Web

Gene ORGANizer

Links human genes to the body parts they affect. Gene ORGANizer is built upon…

Links human genes to the body parts they affect. Gene ORGANizer is built upon an exhaustive curated database that links more than 7,000 genes to approximately 150 anatomical parts using more than…

iPF
Desktop

iPF Integrative Phenotyping Framework

An integrative phenotyping framework for disease subtype discovery. iPF…

An integrative phenotyping framework for disease subtype discovery. iPF integrates homogeneous patient clustering from different omics data in an agglomerative manner and then visualized…

DATA
Desktop

DATA Dynamic Assessment Treatment Algorithm

Translates person-specific dynamic assessment data into a targeted, modularized…

Translates person-specific dynamic assessment data into a targeted, modularized treatment plan. DATA permits researchers to identify potential points of strength or weakness under controlled…

OABrowser
Dataset

OABrowser Open Anatomy Browser

Regroups abdominal, brain, knee and head and neck atlas. OABrowser permits to…

Regroups abdominal, brain, knee and head and neck atlas. OABrowser permits to display three dimensional anatomical models based on developing standards for atlas interoperability. It can show…

BCoDE
Desktop

BCoDE Burden of Communicable Disease in Europe toolkit

Summarizes the impact of communicable disease in the European Union and…

Summarizes the impact of communicable disease in the European Union and European Economic Area Member States. The BCoDE toolkit is a user-friendly software for estimating the burden of communicable…

Orphanet
Dataset

Orphanet

Aims to help improve the diagnosis, care and treatment of patients with rare…

Aims to help improve the diagnosis, care and treatment of patients with rare diseases. Orphanet is the reference portal for information on rare diseases and orphan drugs, for all audiences. Orphanet…

breast-body-fus…
Desktop

breast-body-fusion

Allows users to modify and fuse heterogeneous breast phantoms to whole-body…

Allows users to modify and fuse heterogeneous breast phantoms to whole-body voxel models. Breast-body-fusion includes three dimensional (3D) resizing, placement with respect to the whole-body voxel…

DeepDeath
Desktop

DeepDeath

Provides several information which can help to improve health standards by…

Provides several information which can help to improve health standards by studying health related trajectories in societies with large populations. DeepDeath represents a deep classifier which is…

Physiolibrary
Desktop

Physiolibrary

Considers as a modelica library for human physiology. By graphical joining…

Considers as a modelica library for human physiology. By graphical joining instances of Physiolibrary classes, user can create models of cardiovascular circulation, thermoregulation, metabolic…

ODIN
Desktop

ODIN Oracle for Disorder prediction

Serves to make an accurate prediction for a subset of affected cases while…

Serves to make an accurate prediction for a subset of affected cases while having virtually zero false positive predictions for unaffected samples. ODIN is made to predict an input/test sample to be…

CaGeDb
Dataset

CaGeDb Calcium Gene Database

Stores genes connected to calcium signaling and their associated diseases.…

Stores genes connected to calcium signaling and their associated diseases. CaGeDb is an online database, built using Gene Ontology (GO) terms and genome databases, which provides a map of all of the…

Asthma Mobile…
Mobile

Asthma Mobile Health Study

Helps to track asthma symptoms. Asthma Mobile Health Study is a mobile app that…

Helps to track asthma symptoms. Asthma Mobile Health Study is a mobile app that allows the user to review trends, gives feedback on progress, and provides personalized reminders to take prescribed…

The Collection…
Dataset

The Collection of Immunolabeled Transparent Human Embryos and Fetuses

Provides high-resolution 3D images of the developing peripheral nervous,…

Provides high-resolution 3D images of the developing peripheral nervous, muscular, vascular, cardiopulmonary, and urogenital systems. The Collection of Immunolabeled Transparent Human Embryos and…

CAAPA
Dataset

CAAPA Consortium on Asthma among African-ancestry Populations in the Americas

Hosts whole genome sequences available on 883 individuals from 19 case-control…

Hosts whole genome sequences available on 883 individuals from 19 case-control studies of asthma. CAAPA uses these data to summarize the genomic contributions to individuals of African ancestry. The…

ReadyVax
Mobile

ReadyVax

Provides access to trustworthy, evidence-based vaccine information for a target…

Provides access to trustworthy, evidence-based vaccine information for a target audience of healthcare providers, pharmacists, and patients (including parents of children). ReadyVax provides a…

The Ark
Desktop

The Ark

Allows researchers to manage health and medical research data for humans and…

Allows researchers to manage health and medical research data for humans and animals without specialized database skills or programming expertise. The Ark provides data management for core research…

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PhenomiR
Dataset

PhenomiR

Provides information about differentially regulated miRNA expression in…

Provides information about differentially regulated miRNA expression in diseases and other biological processes. PhenomiR allows machine-readable access to miRNA and target relations from these…

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LncRNADisease
Dataset

LncRNADisease

A database that collected and curated approximately 480 entries of…

A database that collected and curated approximately 480 entries of experimentally supported lncRNA-disease associations, including 166 diseases. LncRNADisease also curated 478 entries of lncRNA…

NIPTRIC
Web

NIPTRIC

Allows interpretation of non-invasive prenatal testing (NIPT) results obtained…

Allows interpretation of non-invasive prenatal testing (NIPT) results obtained by genome-wide methods. NIPTRIC calculates the personalised a posteriori risk (PPR) according to the a priori risk. It…

OpenSurgSim
Desktop

OpenSurgSim

Aims to improve development about real-time surgical simulation. OpenSurgSim is…

Aims to improve development about real-time surgical simulation. OpenSurgSim is an open-source project furnishing building blocks for surgical simulations as well as haptic feedback, or discrete…

re3data
Dataset

re3data

Serves to search data repositories from several academic disciplines. Re3data…

Serves to search data repositories from several academic disciplines. Re3data provides users repositories for the permanent storage and aims to encourage sharing, giving a better visibility of…

London Lower…
Desktop

London Lower Limb Model

Predicts reliable hip joint contact forces based on realistic muscle activation…

Predicts reliable hip joint contact forces based on realistic muscle activation patterns using a quadratic objective function. London Lower Limb Model estimates hip joint muscle tensions by…

MIMIC
Dataset

MIMIC Multiparameter Intelligent Monitoring in Intensive Care

Contains physiologic signals and vital signs time series captured from patient…

Contains physiologic signals and vital signs time series captured from patient monitors, and comprehensive clinical data obtained from hospital medical information systems, for tens of thousands of…

OPEN
Web

OPEN Open Platform for Clinical Nutrition

Allows assessment of dietary intake, as well as for diet planning. OPEN is…

Allows assessment of dietary intake, as well as for diet planning. OPEN is composed of data from Slovenian, European and, to a limited extent, also American food composition tables. It provides a…

IGSTK
Desktop

IGSTK Image-Guided Surgery Toolkit

Aims to develop prototype and create new applications for image-guided surgery.…

Aims to develop prototype and create new applications for image-guided surgery. IGSTK is an open-source repository which is mainly composed of three components: (i) a visualization window to supply a…

Datascope
Desktop

Datascope

Allows to perform exploratory analysis on large biomedical datasets. Datascope…

Allows to perform exploratory analysis on large biomedical datasets. Datascope is an interactive dashboard system. For each dashboard, the software provides a description through a set of 4 JSON…

MediCurator
Desktop

MediCurator

Allows user to fetch image data from heterogeneous data sources, access them in…

Allows user to fetch image data from heterogeneous data sources, access them in a uniform way, and build a local image database without near duplicate images. MediCurator is a medical image data…

Orphadata
Dataset

Orphadata

Provides the scientific community with a comprehensive, high-quality and…

Provides the scientific community with a comprehensive, high-quality and freely-accessible dataset related to rare diseases and orphan drugs, in a reusable format. Orphadata is a database that…

FIDD
Dataset

FIDD Frequency of Inherited Disorders Database

Contains data on the frequency of inherited human disorders. FIDD is useful in…

Contains data on the frequency of inherited human disorders. FIDD is useful in a clinical context, in medical research, for epidemiological studies, and for the planning of genetic services. It can…

pondus
Desktop

pondus

Allows user to survey its weight. pondus is a program that assists in managing…

Allows user to survey its weight. pondus is a program that assists in managing of weight and more: monitoring the percentage of body-fat, muscle and water. User can follow the evolution of its weight…

imagetooth
Desktop

imagetooth

Allows users to generate images for odontograms. imagetooth provides an…

Allows users to generate images for odontograms. imagetooth provides an interface to represent teeth faces in different formats.

reSET
Desktop
Mobile

reSET

Aims to assist patients during their quitting related to stimulants, marijuana,…

Aims to assist patients during their quitting related to stimulants, marijuana, cocaine, or alcohol. reSET increases abstinence from a patient’s substances of abuse during treatment and increases…

pcalendar
Desktop

pcalendar Periodic Calendar

Intends to predict fertility periods and detect women menstrual cycles.…

Intends to predict fertility periods and detect women menstrual cycles. pcalendar supplies a support for Basal Body Temperature (BBT) and sympto-thermal methods. The software allows users to choose…

OpenMolar
Desktop

OpenMolar

Provides a management tool for dentists. OpenMolar allows professionals to…

Provides a management tool for dentists. OpenMolar allows professionals to registered patient records, practice diary in the same interface. The software exists in two different versions.

FreeMedForms
Desktop

FreeMedForms

Provides a high quality open source medical software suite. FreeMedForms can be…

Provides a high quality open source medical software suite. FreeMedForms can be adapted to many needs: different medical specialties, para-medical specialities or even veterinary professions. It can…

SleepyHead
Desktop

SleepyHead

Reviews and explores data produced by continuous positive airway pressure…

Reviews and explores data produced by continuous positive airway pressure (CPAP) and related machines. SleepyHead is a cross platform, opensource sleep tracking program for CPAP and Oximetry data…

SITPLUS
Desktop

SITPLUS

Provides ludic-therapeutic activities for people with disabilities. SITPLUS is…

Provides ludic-therapeutic activities for people with disabilities. SITPLUS is a graphical software that offers different forms of interaction based on computer vision, voice and other peripherals to…

MCPaIRS
Dataset

MCPaIRS

Provides a searchable, enriched and indexed full text Patents. MCPaIRS is a…

Provides a searchable, enriched and indexed full text Patents. MCPaIRS is a database that allows user to search for full texts of granted patents and published applications from India. This online…

Escalex
Dataset

Escalex

Escalex is a Database for Regulations and Compliance. Every record is indexed…

Escalex is a Database for Regulations and Compliance. Every record is indexed in-depth using food commodity and regulation terms, so that users can quickly find highly relevant and reliable results.

OpenDOAR
Web

OpenDOAR

Serves to investigate and categorise field of academic access research…

Serves to investigate and categorise field of academic access research repositories. It can produce a descriptive list about open access repositories of relevance to academic research. Users can use…

VizTargetDiseas…
Desktop

VizTargetDiseases

Provides an interactive and configurable pieChart-web component making it…

Provides an interactive and configurable pieChart-web component making it available to navigate through complicated datasets. VizTargetDiseases is a visualization software that requires a json object…

SPARCS data…
Web
Desktop

SPARCS data interactive visualization

Allows to visualize Statewide Planning and Research Cooperative System data.…

Allows to visualize Statewide Planning and Research Cooperative System data. SPARCS data interactive visualization deals with samples sizes of 10, 100, 1000 and 10000 of records for each year. The…

CFTR1
Dataset

CFTR1 Cystic Fibrosis Mutation Database

Provides up to date information about individual mutations in the CFTR gene.…

Provides up to date information about individual mutations in the CFTR gene. CFTR1 is a database devoted to the collection of mutations in the CFTR gene for the international cystic fibrosis genetics…

BRD
Dataset

BRD Biospecimen Research Database

Accommodates Standard Operating Procedures (SOP). BRD contains peer-reviewed…

Accommodates Standard Operating Procedures (SOP). BRD contains peer-reviewed primary and review articles as well as SOPs in the field of human Biospecimen Science. It is organized in a hierarchy…

ANZOD
Dataset

ANZOD Australia and New Zealand Organ Donation Registry

Continues to record and report on organ donation within Australia and New…

Continues to record and report on organ donation within Australia and New Zealand. ANZOD relates to deceased solid-organ donors, but is similar—description of activity levels and characteristics of…

AmbryShare
Dataset

AmbryShare

Sequences and shares aggregate, anonymizes genomic data from patients with…

Sequences and shares aggregate, anonymizes genomic data from patients with disease, to understand the genetic basis of all human disease. It is comprised of three key pieces: The AmbryShare database,…

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miR2Disease
Dataset

miR2Disease

A manually curated database, aims at providing a comprehensive resource of…

A manually curated database, aims at providing a comprehensive resource of miRNA deregulation in various human diseases. miR2Disease provides a user-friendly interface for a convenient retrieval of…

ECG-ViEW
Dataset

ECG-ViEW Electrocardiogram Vigilance with Electronic data Warehouse

Contains all diagnoses, drug prescriptions, and selected laboratory test…

Contains all diagnoses, drug prescriptions, and selected laboratory test results that can affect an electrocardiograpm (ECG). ECG-ViEW is a downloadable database that provides an opportunity to…

DESTAF
Dataset

DESTAF Dragon Exploration System for Toxicants and Fertility

A specialized, public resource specifically aimed at researchers investigating…

A specialized, public resource specifically aimed at researchers investigating reproductive toxicity. Its primary goal is to enable researchers to efficiently and rapidly query the human reproductive…

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