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Unclassified software tools | Health/Medical research data

Biologic…
Dataset

Biologic Specimen and Data Repository Information Coordinating Center

Maximizes the scientific value of historical and contemporary NHLBI biospecimen…

Maximizes the scientific value of historical and contemporary NHLBI biospecimen and data collections. BioLINCC facilitates access by qualified researchers to these research resources, and enhances…

DiseaseMeth
Dataset

DiseaseMeth

Presents the most complete collection and annotation of aberrant DNA…

Presents the most complete collection and annotation of aberrant DNA methylation in human diseases, especially various cancers. DiseaseMeth is focused not only on curated information about diseases,…

KORA
Dataset

KORA Kooperative Gesundheitsforschung in der Region Augsburg

Provides recent as well as existing studies with their respective data and…

Provides recent as well as existing studies with their respective data and biosamples. KORA is a research platform that serves as a basis for population-based epidemiological studies on different…

FAIRsharing
Dataset

FAIRsharing

Allows to research informative and educational resource. FAIRsharing is a…

Allows to research informative and educational resource. FAIRsharing is a web-based, searchable portal of three interlinked registries, containing both in-house and crowdsourced manually curated…

TwoPhaseInd
Desktop

TwoPhaseInd

Implements a number of efficient statistical methods developed for : (i)…

Implements a number of efficient statistical methods developed for : (i) estimating subgroup treatment effects and gene–treatment interactions, (ii) exploiting the gene–treatment independence…

Dual RNA-Seq
Dataset

Dual RNA-Seq

A database of detailed time-resolved dual transcriptomes data. Dual RNA-Seq…

A database of detailed time-resolved dual transcriptomes data. Dual RNA-Seq allows simultaneous monitoring of the transcriptomes of both host and pathogen. We invite pneumococcal researchers to use…

GSTiCluster
Desktop

GSTiCluster

Integrates vertical multi-omics data for disease subtype discovery using…

Integrates vertical multi-omics data for disease subtype discovery using overlapping group lasso and tight clustering in the iCluster latent variable model. GSTiCluster fits a latent variable model…

Gene ORGANizer
Web

Gene ORGANizer

Links human genes to the body parts they affect. Gene ORGANizer is built upon…

Links human genes to the body parts they affect. Gene ORGANizer is built upon an exhaustive curated database that links more than 7,000 genes to approximately 150 anatomical parts using more than…

iPF
Desktop

iPF Integrative Phenotyping Framework

An integrative phenotyping framework for disease subtype discovery. iPF…

An integrative phenotyping framework for disease subtype discovery. iPF integrates homogeneous patient clustering from different omics data in an agglomerative manner and then visualized…

DATA
Desktop

DATA Dynamic Assessment Treatment Algorithm

Translates person-specific dynamic assessment data into a targeted, modularized…

Translates person-specific dynamic assessment data into a targeted, modularized treatment plan. DATA permits researchers to identify potential points of strength or weakness under controlled…

OABrowser
Dataset

OABrowser Open Anatomy Browser

Regroups abdominal, brain, knee and head and neck atlas. OABrowser permits to…

Regroups abdominal, brain, knee and head and neck atlas. OABrowser permits to display three dimensional anatomical models based on developing standards for atlas interoperability. It can show…

BCoDE
Desktop

BCoDE Burden of Communicable Disease in Europe toolkit

Summarizes the impact of communicable disease in the European Union and…

Summarizes the impact of communicable disease in the European Union and European Economic Area Member States. The BCoDE toolkit is a user-friendly software for estimating the burden of communicable…

DeepDeath
Desktop

DeepDeath

Provides several information which can help to improve health standards by…

Provides several information which can help to improve health standards by studying health related trajectories in societies with large populations. DeepDeath represents a deep classifier which is…

Physiolibrary
Desktop

Physiolibrary

Considers as a modelica library for human physiology. By graphical joining…

Considers as a modelica library for human physiology. By graphical joining instances of Physiolibrary classes, user can create models of cardiovascular circulation, thermoregulation, metabolic…

ODIN
Desktop

ODIN Oracle for Disorder prediction

Serves to make an accurate prediction for a subset of affected cases while…

Serves to make an accurate prediction for a subset of affected cases while having virtually zero false positive predictions for unaffected samples. ODIN is made to predict an input/test sample to be…

CaGeDb
Dataset

CaGeDb Calcium Gene Database

Stores genes connected to calcium signaling and their associated diseases.…

Stores genes connected to calcium signaling and their associated diseases. CaGeDb is an online database, built using Gene Ontology (GO) terms and genome databases, which provides a map of all of the…

Asthma Mobile…
Mobile

Asthma Mobile Health Study

Helps to track asthma symptoms. Asthma Mobile Health Study is a mobile app that…

Helps to track asthma symptoms. Asthma Mobile Health Study is a mobile app that allows the user to review trends, gives feedback on progress, and provides personalized reminders to take prescribed…

The Collection…
Dataset

The Collection of Immunolabeled Transparent Human Embryos and Fetuses

Provides high-resolution 3D images of the developing peripheral nervous,…

Provides high-resolution 3D images of the developing peripheral nervous, muscular, vascular, cardiopulmonary, and urogenital systems. The Collection of Immunolabeled Transparent Human Embryos and…

CAAPA
Dataset

CAAPA Consortium on Asthma among African-ancestry Populations in the Americas

Hosts whole genome sequences available on 883 individuals from 19 case-control…

Hosts whole genome sequences available on 883 individuals from 19 case-control studies of asthma. CAAPA uses these data to summarize the genomic contributions to individuals of African ancestry. The…

ReadyVax
Mobile

ReadyVax

Provides access to trustworthy, evidence-based vaccine information for a target…

Provides access to trustworthy, evidence-based vaccine information for a target audience of healthcare providers, pharmacists, and patients (including parents of children). ReadyVax provides a…

The Ark
Desktop

The Ark

Allows researchers to manage health and medical research data for humans and…

Allows researchers to manage health and medical research data for humans and animals without specialized database skills or programming expertise. The Ark provides data management for core research…

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PhenomiR
Dataset

PhenomiR

Provides information about differentially regulated miRNA expression in…

Provides information about differentially regulated miRNA expression in diseases and other biological processes. PhenomiR allows machine-readable access to miRNA and target relations from these…

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LncRNADisease
Dataset

LncRNADisease

A database that collected and curated approximately 480 entries of…

A database that collected and curated approximately 480 entries of experimentally supported lncRNA-disease associations, including 166 diseases. LncRNADisease also curated 478 entries of lncRNA…

re3data
Dataset

re3data

Serves to search data repositories from several academic disciplines. Re3data…

Serves to search data repositories from several academic disciplines. Re3data provides users repositories for the permanent storage and aims to encourage sharing, giving a better visibility of…

London Lower…
Desktop

London Lower Limb Model

Predicts reliable hip joint contact forces based on realistic muscle activation…

Predicts reliable hip joint contact forces based on realistic muscle activation patterns using a quadratic objective function. London Lower Limb Model estimates hip joint muscle tensions by…

MIMIC
Dataset

MIMIC Multiparameter Intelligent Monitoring in Intensive Care

Contains physiologic signals and vital signs time series captured from patient…

Contains physiologic signals and vital signs time series captured from patient monitors, and comprehensive clinical data obtained from hospital medical information systems, for tens of thousands of…

Datascope
Desktop

Datascope

Allows to perform exploratory analysis on large biomedical datasets. Datascope…

Allows to perform exploratory analysis on large biomedical datasets. Datascope is an interactive dashboard system. For each dashboard, the software provides a description through a set of 4 JSON…

MediCurator
Desktop

MediCurator

Allows user to fetch image data from heterogeneous data sources, access them in…

Allows user to fetch image data from heterogeneous data sources, access them in a uniform way, and build a local image database without near duplicate images. MediCurator is a medical image data…

Orphadata
Dataset

Orphadata

Provides the scientific community with a comprehensive, high-quality and…

Provides the scientific community with a comprehensive, high-quality and freely-accessible dataset related to rare diseases and orphan drugs, in a reusable format. Orphadata is a database that…

MCPaIRS
Dataset

MCPaIRS

Provides a searchable, enriched and indexed full text Patents. MCPaIRS is a…

Provides a searchable, enriched and indexed full text Patents. MCPaIRS is a database that allows user to search for full texts of granted patents and published applications from India. This online…

Escalex
Dataset

Escalex

Escalex is a Database for Regulations and Compliance. Every record is indexed…

Escalex is a Database for Regulations and Compliance. Every record is indexed in-depth using food commodity and regulation terms, so that users can quickly find highly relevant and reliable results.

OpenDOAR
Web

OpenDOAR

Serves to investigate and categorise field of academic access research…

Serves to investigate and categorise field of academic access research repositories. It can produce a descriptive list about open access repositories of relevance to academic research. Users can use…

VizTargetDiseas…
Desktop

VizTargetDiseases

Provides an interactive and configurable pieChart-web component making it…

Provides an interactive and configurable pieChart-web component making it available to navigate through complicated datasets. VizTargetDiseases is a visualization software that requires a json object…

SPARCS data…
Web
Desktop

SPARCS data interactive visualization

Allows to visualize Statewide Planning and Research Cooperative System data.…

Allows to visualize Statewide Planning and Research Cooperative System data. SPARCS data interactive visualization deals with samples sizes of 10, 100, 1000 and 10000 of records for each year. The…

CFTR1
Dataset

CFTR1 Cystic Fibrosis Mutation Database

Provides up to date information about individual mutations in the CFTR gene.…

Provides up to date information about individual mutations in the CFTR gene. CFTR1 is a database devoted to the collection of mutations in the CFTR gene for the international cystic fibrosis genetics…

BRD
Dataset

BRD Biospecimen Research Database

Accommodates Standard Operating Procedures (SOP). BRD contains peer-reviewed…

Accommodates Standard Operating Procedures (SOP). BRD contains peer-reviewed primary and review articles as well as SOPs in the field of human Biospecimen Science. It is organized in a hierarchy…

ANZOD
Dataset

ANZOD Australia and New Zealand Organ Donation Registry

Continues to record and report on organ donation within Australia and New…

Continues to record and report on organ donation within Australia and New Zealand. ANZOD relates to deceased solid-organ donors, but is similar—description of activity levels and characteristics of…

AmbryShare
Dataset

AmbryShare

Sequences and shares aggregate, anonymizes genomic data from patients with…

Sequences and shares aggregate, anonymizes genomic data from patients with disease, to understand the genetic basis of all human disease. It is comprised of three key pieces: The AmbryShare database,…

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miR2Disease
Dataset

miR2Disease

A manually curated database, aims at providing a comprehensive resource of…

A manually curated database, aims at providing a comprehensive resource of miRNA deregulation in various human diseases. miR2Disease provides a user-friendly interface for a convenient retrieval of…

ECG-ViEW
Dataset

ECG-ViEW Electrocardiogram Vigilance with Electronic data Warehouse

Contains all diagnoses, drug prescriptions, and selected laboratory test…

Contains all diagnoses, drug prescriptions, and selected laboratory test results that can affect an electrocardiograpm (ECG). ECG-ViEW is a downloadable database that provides an opportunity to…

DESTAF
Dataset

DESTAF Dragon Exploration System for Toxicants and Fertility

A specialized, public resource specifically aimed at researchers investigating…

A specialized, public resource specifically aimed at researchers investigating reproductive toxicity. Its primary goal is to enable researchers to efficiently and rapidly query the human reproductive…

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