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Unclassified software tools | MNase-Seq data analysis

G T A T C G C T A
DFilter
Desktop

DFilter

A detection algorithm that identifies regulatory features in ChIP-seq,…

A detection algorithm that identifies regulatory features in ChIP-seq, DNase-seq and FAIRE-seq data more accurately than assay-specific algorithms. The mathematical formalism underlying DFilter…

G T A T C G C T A
SeqPlots
Desktop

SeqPlots

Visualizes next-generation sequencing (NGS) signals and sequence motif…

Visualizes next-generation sequencing (NGS) signals and sequence motif densities along genomic features using average plots and heatmaps. It can also calculate sequence motif density profiles from…

G T A T C G C T A
CIPHER
Desktop

CIPHER

Automates the processing and analysis of several commonly used Next Generation…

Automates the processing and analysis of several commonly used Next Generation Sequencing (NGS) datasets including: ChIP-seq, RNA-seq, Global Run On sequencing (GRO-seq), micrococcal nuclease…

G T A T C G C T A
CISD
Desktop

CISD Chromatin Interaction Site Detector

Allows genome-wide identification of potential chromatin– chromatin…

Allows genome-wide identification of potential chromatin– chromatin interaction (CCI) sites and loops at kilobase resolution. CISD provides two algorithms: CISD that identifies chromatin…

G T A T C G C T A
CAM
Desktop

CAM

Performs quality control for micrococcal nuclease digestion followed by…

Performs quality control for micrococcal nuclease digestion followed by high-throughput sequencing (MNase-seq) data. CAM permits users to compare their data to a set of 268 historical MNase-seq…

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