Serves for effective segmentation of multidimensional datasets. MIB can recognize several number of imaging formats and offers a variety of image processing tools. It also simplifies utilization and quantification of acquired data. It permits users to segment large datasets, to realize 3D visualization, and to quantify images and models. Its parameters enable users to insert plugin s to customize the program for specific needs.
Allows staging of mouse hind limbs. Morphometric Limb Staging System is a web-based morphometric staging system that consists of (1) a Java applet allowing users to upload their photos and draw the splines, (2) a server-side PHP program that calculates the stage of each new limb bud and (3) a MySQL database to store all the photos, spline data and metadata. Each user subsequently has access to all their photos, splines and predicted stages.
Detects automatically the choroidal boundaries on optical coherence tomography (OCT) time series at a single location in the retina. choroidSegmentation segments the anterior and posterior interfaces of the choroid from an OCT volume centered at the macula, and automatically builds a 2D thickness map (3D topology). It also detects the position of 3 layers: the retinal-vitreous interface (RVI), the Bruch’s membrane (BM), and the choroid-sclera interface (CSI).
Assists users for computer-aided segmentation of retinal layers in optical coherence tomography (OCT) images. Caserel is an open-source software suite that supports segmentation of 6 retinal layers by automatically delineating 7 boundaries (ILM, NFL/GCL, IPL/INL, INL/OPL, OPL/ONL, IS/OS, RPE) from OCT images. It also provides an image browser/editor for manual and semi-automated correction of the segmented retinal boundaries.
Contains a robust implementation of the backpropagation algorithm. The algorithm is ideally suited for the application to biological cells. Furthermore, the implementation is a drop-in replacement for the classical backprojection algorithm and is made available to the large user community of the Python programming language.
Offers a collection of filters for 3D images supported by Java Native Interface. FastFilter3D performs several 3D filtering on 8-bits and 16-16-bits gray-levels stacks. This ImageJ plugin performs the following 3D filters: median, mean, minimum, maximum, maximum local and topchat.
Serves for visualizing electron tomography data. Tomviz can utilize the large quantities of memory and processing resources required to render, manipulate, and analyze voluminous 3D tomograms. It provides a graphical user interface (GUI) where objects can be rendered as shaded contours or volumetric projections. This tool also offers a set of functions such as multiple datasets, colormaps, and other visualization settings.
Provides a common visualization and storage platform, which can be used for visualization of data from any source, provided that an import filter exists for this format. This platform can be extended by various software packages, individually designed for analysis of specific data sets. Visualization is based on multi-planar reconstruction allowing extraction of arbitrary slices from a 3D-volume.
Provides a root system architecture characterization software. ARIA is based on a mathematically rigorous approach of converting root images into graphs. It automates phenotyping with the potential of adding additional features. This tool completes large phenotyping experiments required for many quantitative genetic studies. It is able to analyze 2D flat plane images and 3D images of roots.
0 - 0 of 0
1 - 3 of 3