A manually curated database and software tool for planarian regenerative experiments, based on a mathematical graph formalism. Planform contains more than a thousand experiments from the main publications in the planarian literature. The software tool provides the user with a graphical interface to easily interact with and mine the database. The presented system is a valuable resource for the regeneration community and, more importantly, will pave the way for the application of novel artificial intelligence tools to extract knowledge from this dataset.
Provides an application dedicated to microplate data acquisition and analysis. SoftMax Pro allows the performing of data, which can be originated from an external microplate, by using pre-configured protocols. It also furnishes more than 20 options for curve fit and automatic calculations of relative potency. Besides, it includes multiple export options towards notebooks or laboratory information management system (LIMS).
Permits users to access to a large number of microscope images. OMERO.searcher consists of an open-source content-based image search tool for the cell and computational biology community. This tool includes features for verifying if someone has previously observed a pattern similar to an unrecognized one, and for finding examples of a particular pattern in other cell types or different modes of microscopy.
Permits users to perform colorimetric and turbidimetric analyses, as well as report analysis for raw data, absorbance, limit, matrix, normalization, and curve fit. Microplate Manager is a program designed for reading the plate, generating an array of values, and performing data analysis. It supplies exact data with template design flexibility along with guides for designating plate wells, mapping dilutions, and multiple sample series.
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