Identifies agotrons in Ago CLIPseq data. agotron_detector is a toolkit comprising three scripts that retrieve, analyze and annotate short introns respectively, to identify and quantify agotron expression. The software (i) intersects genome-mapped reads with annotated short introns, and (ii) analyzes and outputs the quantity of reads, distribution of read-lengths, and the 5′ heterogeneity for each intron investigated.
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