Allows to query the database GlyTorsionDB. GlyTorsion performs a graphical output of results by generating diagrams or plots. GlyTorsionDB contains the torsion angle values of all carbohydrate linkages present in the PDB. This tool permits users to see which angles are preferred by the residues of interest.
Evaluates the quality of a protein 3D structure using protein backbone torsion angles. Carp permits users to query GlyTorsionDB, a database containing the torsion angle values of all carbohydrate linkages present in the Protein Data Bank (PDB). It is based on the pdb2linucs algorithm. This tool is able to generate separate plot for each different linkage type.
Allows statistical analyses on the types of amino acids around carbohydrate chains. GlyVicinity can also proceed analyses on atoms forming the closest contacts between protein and carbohydrate residues.
Identifies and assigns carbohydrate structures using only the reported atom types and their 3D atom coordinates. pdb-care allows users to analyse a file obtained directly from PDB using the PDB-ID, or to provide a pdb-file located on the local computer. It is based on a carbohydrate detection software. This tool uses the LINUCS-notation to normalise complex carbohydrate structures.
Generates a complete structural description of the complete glycan, which can be easily transformed to the IUPAC nomenclature. Pdb2linucs is able to automatically extract carbohydrate information from PDB-files.
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