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Protocols

UniCarbKB specifications

Information


Unique identifier OMICS_09728
Name UniCarbKB
Restrictions to use None
Maintained Yes

Maintainer


  • person_outline Nicolle H. Packer

Publications for UniCarbKB

UniCarbKB citations

 (4)
call_split

iPTMnet: an integrated resource for protein post translational modification network discovery

2017
Nucleic Acids Res
PMCID: 5753337
PMID: 29145615
DOI: 10.1093/nar/gkx1104
call_split See protocol

[…] -specific PTM proteoforms (PRO category: organism-modification), we extract the evidence, reference UniProtKB AC and PTM sites along with their corresponding PTM types (represented by a PSI-MOD () or UniCarbKB () identifier) from the definition of the term. PTM enzyme information is extracted from the PRO comment line; (ii) Proteoform-dependent PPI information is extracted from the PRO annotation […]

library_books

Mass Spectrometry Based N Glycomics of Colorectal Cancer

2015
Int J Mol Sci
PMCID: 4691109
PMID: 26690136
DOI: 10.3390/ijms161226165

[…] dition to these (semi) automated tools for analysis of glycan data from LC-MS/MS data, efforts have been made towards integrating a number of glycomics-centric databases into a common platform called UnicarbKB [] and UnicarbDB [], which act as centralized data repositories for glycan data and work on the interface with the already available glycomics (GlycomeDB, EUROcarbDB) and proteomics (Uniprot […]

library_books

Site specific O Glycosylation Analysis of Human Blood Plasma Proteins*

2015
PMCID: 4739677
PMID: 26598643
DOI: 10.1074/mcp.M115.053546

[…] f a glycosylation consensus motif within the putative peptide sequence (N-glycosylation: Asn-X-Ser/Thr; O-glycosylation: Ser/Thr). Furthermore, knowledge, derived from public databases (UniProtKB and UniCarbKB) on already described N-/O-glycosylation sites within the putative peptide sequence or within the entire protein, was used to validate a peptide/protein hit. ETD-MS2 fragment spectra of iden […]

library_books

Complementary LC MS/MS Based N Glycan, N Glycopeptide, and Intact N Glycoprotein Profiling Reveals Unconventional Asn71 Glycosylation of Human Neutrophil Cathepsin G

2015
Biomolecules
PMCID: 4598777
PMID: 26274980
DOI: 10.3390/biom5031832

[…] the corresponding monosaccharide compositions) when using search engines (e.g., Byonic) for glycomics/glycoproteomics experiments. Upon consultation of an established glycan structure database (i.e., UniCarbKB), we noticed that monoantennary core-truncated N-glycans have not yet been deposited. We ensured that artificial generation of these truncated structures by any contaminating glycosidase act […]

Citations

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UniCarbKB institution(s)
Biomolecular Frontiers Research Centre, Macquarie University, Sydney, NSW, Australia; Medical Biochemistry, University of Gothenburg, Gothenburg, Sweden; National Institute for Bioprocessing Research and Training, Dublin, Ireland; Systems Biology Initiative, University of NSW, Sydney, NSW, Australia; Department of Bioinformatics, Soka University, Tokyo, Japan; Oxford Glycobiology Institute, University of Oxford, Oxford, UK; Department of Biomolecular Systems, Max Planck Institute of Colloids and Interfaces, Berlin, Germany; Proteome Informatics Group, Swiss Institute of Bioinformatics, Geneva, Switzerland

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