UniMoG protocols

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UniMoG specifications

Information


Unique identifier OMICS_24734
Name UniMoG
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some genomes.
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Source code URL https://bibiserv.cebitec.uni-bielefeld.de/applications/dcj/resources/downloads/UniMoG-Sources.zip
Maintained Yes

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Maintainer


  • person_outline Marilia Braga <>

Publication for UniMoG

UniMoG in pipeline

2018
PMCID: 5888179
PMID: 29635329
DOI: 10.1093/gbe/evy063

[…] bryopsidalean phylogeny, the mgra v.2 webserver was used (), using the phylogenomic topology and the collinear blocks generated with mauve as inputs. finally, the double-cut-and-join (dcj) model in unimog () was used to calculate the number of rearrangements among the pairwise aligned sequences., the assembly of the illumina reads for the five newly sequenced species yielded complete […]


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UniMoG in publications

 (7)
PMCID: 5940233
PMID: 29738547
DOI: 10.1371/journal.pone.0196995

[…] pcr amplification followed by sanger sequencing. the annotated plastid genomes were visualized using organellargenomedraw v1.2 []. comparative analysis of the genome structure was accomplished using unimog v1.0 [] and mauve genome alignment v2.2.0 [, ] through the geneious plug-in using the default setting []., habitat information of each species was referred from previous studies. ott [] […]

PMCID: 5888179
PMID: 29635329
DOI: 10.1093/gbe/evy063

[…] bryopsidalean phylogeny, the mgra v.2 webserver was used (), using the phylogenomic topology and the collinear blocks generated with mauve as inputs. finally, the double-cut-and-join (dcj) model in unimog () was used to calculate the number of rearrangements among the pairwise aligned sequences., the assembly of the illumina reads for the five newly sequenced species yielded complete […]

PMCID: 5695614
PMID: 29095864
DOI: 10.1371/journal.pone.0187104

[…] all plastid genomes. the ''backbone'' file produced by mauve was used to compare synteny among the taxa using the r library genoplotr []. brown algal plastid genome distances were calculated using unimog []. for further analysis, only the double cut and join (dcj) and hannenhalli and pevzner (hp) models were used, as their results were exactly identical to the restricted djc and the inversion […]

PMCID: 5033165
PMID: 26838503
DOI: 10.1080/21645698.2016.1138196

[…] 51: the number of aggregated plants growing in the mud at the bottom of the gutters was dramatically decreased when the mud disappeared (to 2% of the previous year's level), and road cleaning using unimog vehicles removed juveniles that grew on the side strip along the road (nishizawa et al., )., hand weeding along route 23 seemed to have affected the dynamics of oilseed rape populations […]

PMCID: 4388391
PMID: 25849557
DOI: 10.1371/journal.pone.0121020

[…] []). genbank accession numbers of the chloroplast and mitochondrial genomes are as follows: kp720616, kp720617, respectively., the double-cut-and-join (dcj) [] genome distances were calculated with unimog [],[] to estimate the number of rearrangements between the selected genomes. the dcj values were calculated with all genes, and a separate analysis was run without trnas ( and tables). genome […]


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UniMoG institution(s)
Technische Fakultät, Universität Bielefeld, Bielefeld, Germany

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