Unipro UGENE statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

Unipro UGENE specifications

Information


Unique identifier OMICS_01022
Name Unipro UGENE
Alternative name UGENE
Software type Framework/Library
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
License GNU General Public License version 2.0
Computer skills Medium
Version 1.31
Stability Stable
Maintained Yes

Download


github.png

Versioning


No version available

Documentation


Maintainer


  • person_outline Unipro UGENE Team

Publications for Unipro UGENE

Unipro UGENE citations

 (207)
call_split

Viromic Analysis of Wastewater Input to a River Catchment Reveals a Diverse Assemblage of RNA Viruses

2018
mSystems
PMCID: 5964442
DOI: 10.1128/mSystems.00025-18
call_split See protocol

[…] of Prokka-annotated picobirnaviruses were extracted using extractUpStreamDNA (https://github.com/ajvilleg/extractUpStreamDNA), and all 5′ UTRs and transcription start sites were manually verified in UGene (). These extracted sequences were then subjected to a motif search using the MEME Suite (, ). […]

call_split

Anti neuraminidase antibodies against pandemic A/H1N1 influenza viruses in healthy and influenza infected individuals

2018
PLoS One
PMCID: 5942809
PMID: 29742168
DOI: 10.1371/journal.pone.0196771
call_split See protocol

[…] CY022071, EU124136, CY058489, CY044367, CY022351, AF250363, CY061831, GU984385, GU367316, GQ183619, CY050881, HM189306, GU984412, FJ798780, EU045389, GQ484356. Computer analysis was carried out using UGENE software from Unipro (Russia, Novosibirsk) []. […]

library_books

Full Genome Characterization and Genetic Evolution of West African Isolates of Bagaza Virus

2018
Viruses
PMCID: 5923487
PMID: 29652824
DOI: 10.3390/v10040193

[…] Full-length genome sequences BAGV isolates were obtained by assembling overlapping nucleotide sequences using the Unipro UGENE software (http://ugene.net/download.html) []. Multiple alignments of full-genome sequences were carried out by using Muscle algorithm (http://www.drive5.com/muscle/) [] within Unipro UGEN […]

library_books

Flagellin fused protein targeting M2e and HA2 induces potent humoral and T cell responses and protects mice against various influenza viruses a subtypes

2018
J Biomed Sci
PMCID: 5891888
PMID: 29631629
DOI: 10.1186/s12929-018-0433-5

[…] D databases. In order to construct consensuses, sequences were aligned using the MAFFT server using either FFT-NS-I or FFT-NS-2 algorithms (depending on the number of sequences) [] and analyzed using Unipro UGENE (v.1.14.0) software []. Alignment and sequence analysis were performed using Vector NTI (v10.0) software (Invitrogen, USA). A search for experimental B-cell and CD4+ T-cell epitopes homol […]

library_books

The crystal structure of XdpB, the bacterial old yellow enzyme, in an FMN free form

2018
PLoS One
PMCID: 5891007
PMID: 29630677
DOI: 10.1371/journal.pone.0195299

[…] abases were searched with the amino acid sequence of XdpB as a query to select 150 sequences that were subjected to a multiple sequence alignment (MSA) by the ClustalW algorithm as implemented in the Ugene program [] or MEGA 6 []. Their genomic localization in the xdo operon was verified by the tblastn tool (Blast, NCBI, version (2.6.0)). Structural comparison was prepared by MatchMaker implemente […]

library_books

Surface Expression, Function, and Pharmacology of Disease Associated Mutations in the Membrane Domain of the Human GluN2B Subunit

2018
PMCID: 5897658
PMID: 29681796
DOI: 10.3389/fnmol.2018.00110

[…] disulfide bridges) in order to stabilize the interaction between amino-terminal domains as well as in the TMD region. The homologous sequences were aligned using MUSCLE and visually inspected within Unipro UGENE program. The all-atom model, including the residues missing in the template structures, was prepared using the automodel function of the MODELLER 9v14 suite of programs (Sali and Blundell […]

Citations

Looking to check out a full list of citations?

Unipro UGENE institution(s)
BioInfoExperts, LLC, Thibodaux, LA, USA; UNIPRO, LLC, Novosibirsk, Russia; University of Florida, Gainesville, FL, USA
Unipro UGENE funding source(s)
Supported by the European Union’s Horizon 2020 research and innovation program under grant agreement No 634650.

Unipro UGENE review

star_border star_border star_border star_border star_border
star star star star star

Amr Galal

star_border star_border star_border star_border star_border
star star star star star
Desktop
the tool is very good powerful and trustable
just the ubuntu version is not working well all the time