Unipro UGENE statistics
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Unipro UGENE specifications
Information
| Unique identifier | OMICS_01022 |
|---|---|
| Name | Unipro UGENE |
| Alternative name | UGENE |
| Software type | Framework/Library |
| Interface | Graphical user interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS, Windows |
| Programming languages | C++ |
| License | GNU General Public License version 2.0 |
| Computer skills | Medium |
| Version | 1.31 |
| Stability | Stable |
| Maintained | Yes |
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Versioning
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Documentation
Maintainer
- person_outline Unipro UGENE Team
Publications for Unipro UGENE
Unipro UGENE NGS pipelines and components for variant calling, RNA-seq and ChIP-seq data analyses
Unipro UGENE: a unified bioinformatics toolkit.
Unipro UGENE citations
(207)Viromic Analysis of Wastewater Input to a River Catchment Reveals a Diverse Assemblage of RNA Viruses
[…] of Prokka-annotated picobirnaviruses were extracted using extractUpStreamDNA (https://github.com/ajvilleg/extractUpStreamDNA), and all 5′ UTRs and transcription start sites were manually verified in UGene (). These extracted sequences were then subjected to a motif search using the MEME Suite (, ). […]
Anti neuraminidase antibodies against pandemic A/H1N1 influenza viruses in healthy and influenza infected individuals
[…] CY022071, EU124136, CY058489, CY044367, CY022351, AF250363, CY061831, GU984385, GU367316, GQ183619, CY050881, HM189306, GU984412, FJ798780, EU045389, GQ484356. Computer analysis was carried out using UGENE software from Unipro (Russia, Novosibirsk) []. […]
Full Genome Characterization and Genetic Evolution of West African Isolates of Bagaza Virus
[…] Full-length genome sequences BAGV isolates were obtained by assembling overlapping nucleotide sequences using the Unipro UGENE software (http://ugene.net/download.html) []. Multiple alignments of full-genome sequences were carried out by using Muscle algorithm (http://www.drive5.com/muscle/) [] within Unipro UGEN […]
Flagellin fused protein targeting M2e and HA2 induces potent humoral and T cell responses and protects mice against various influenza viruses a subtypes
[…] D databases. In order to construct consensuses, sequences were aligned using the MAFFT server using either FFT-NS-I or FFT-NS-2 algorithms (depending on the number of sequences) [] and analyzed using Unipro UGENE (v.1.14.0) software []. Alignment and sequence analysis were performed using Vector NTI (v10.0) software (Invitrogen, USA). A search for experimental B-cell and CD4+ T-cell epitopes homol […]
The crystal structure of XdpB, the bacterial old yellow enzyme, in an FMN free form
[…] abases were searched with the amino acid sequence of XdpB as a query to select 150 sequences that were subjected to a multiple sequence alignment (MSA) by the ClustalW algorithm as implemented in the Ugene program [] or MEGA 6 []. Their genomic localization in the xdo operon was verified by the tblastn tool (Blast, NCBI, version (2.6.0)). Structural comparison was prepared by MatchMaker implemente […]
Surface Expression, Function, and Pharmacology of Disease Associated Mutations in the Membrane Domain of the Human GluN2B Subunit
[…] disulfide bridges) in order to stabilize the interaction between amino-terminal domains as well as in the TMD region. The homologous sequences were aligned using MUSCLE and visually inspected within Unipro UGENE program. The all-atom model, including the residues missing in the template structures, was prepared using the automodel function of the MODELLER 9v14 suite of programs (Sali and Blundell […]
Citations
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Unipro UGENE review
just the ubuntu version is not working well all the time