Unwords statistics

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Unwords specifications

Information


Unique identifier OMICS_08202
Name Unwords
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Sequence
Input format FASTA
Output data Unword computed from given sequence data
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Julia Herold <>

Information


Unique identifier OMICS_08202
Name Unwords
Interface Web user interface
Restrictions to use None
Input data Sequence
Input format FASTA
Output data Unword computed from given sequence data
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Julia Herold <>

Publication for Unwords

Unwords in publications

 (4)
PMCID: 4133078
PMID: 25099007
DOI: 10.1186/1471-2105-15-264

[…] of short subsequences (“words”) of up to 9 nt length [], including those reserved for barcodes. frequencies of words in the genome are neither equal nor random [] and absent words (also known as unwords) could be found for large genomes starting from 10 nt to 11 nt []. curiously, unwords have not received any attention as potential barcodes, whereas small and potentially redundant dna […]

PMCID: 3031530
PMID: 21386877
DOI: 10.1371/journal.pone.0016065

[…] side without loss of similarity., minimal absent words are a generalization of the short absent words introduced by hampikian and andersen under the term nullomers , and by herold et al. as unwords . for sequences with all letters and pairs of letters of the alphabet, the set of nullomers/unwords will correspond to the shortest minimal absent words., for illustration, consider […]

PMCID: 2770528
PMID: 19814816
DOI: 10.1186/1471-2164-10-463

[…] of several segments of the non-coding portion of the arabidopsis genome. each segment contains a unique word-based signature. the respective signatures consist of the sets of enriched words, 'unwords', and word pairs within a segment, as well as the preferential locations and functional classifications for the signature words. additionally, the positional distributions of enriched words […]

PMCID: 2698904
PMID: 19426495
DOI: 10.1186/1471-2105-10-137

[…] are absent from the entire known genetic data. herold et al. [] used the term "unword" also to designate the shortest absent words. according to the definition, any given dna sequence has nullomers/unwords of a certain size, that are uniquely defined for that sequence, and also of the shortest possible size., the algorithm used by hampikian and andersen [] to obtain the absent words tracks […]


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Unwords institution(s)
Center of Biotechnology, Bielefeld University, Postfach, Bielefeld, Germany

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