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Number of citations per year for the bioinformatics software tool Unwords
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Unwords specifications

Information


Unique identifier OMICS_08202
Name Unwords
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Sequence
Input format FASTA
Output data Unword computed from given sequence data
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Julia Herold

Information


Unique identifier OMICS_08202
Name Unwords
Interface Web user interface
Restrictions to use None
Input data Sequence
Input format FASTA
Output data Unword computed from given sequence data
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Julia Herold

Publication for Unwords

Unwords citations

 (4)
library_books

Enhancing the detection of barcoded reads in high throughput DNA sequencing data by controlling the false discovery rate

2014
BMC Bioinformatics
PMCID: 4133078
PMID: 25099007
DOI: 10.1186/1471-2105-15-264

[…] ions of short subsequences (“words”) of up to 9 nt length [], including those reserved for barcodes. Frequencies of words in the genome are neither equal nor random [] and absent words (also known as unwords) could be found for large genomes starting from 10 nt to 11 nt []. Curiously, unwords have not received any attention as potential barcodes, whereas small and potentially redundant DNA sequenc […]

library_books

Minimal Absent Words in Prokaryotic and Eukaryotic Genomes

2011
PLoS One
PMCID: 3031530
PMID: 21386877
DOI: 10.1371/journal.pone.0016065

[…] r right-end side without loss of similarity.Minimal absent words are a generalization of the short absent words introduced by Hampikian and Andersen under the term nullomers , and by Herold et al. as unwords . For sequences with all letters and pairs of letters of the alphabet, the set of nullomers/unwords will correspond to the shortest minimal absent words.For illustration, consider the sequence […]

library_books

The word landscape of the non coding segments of the Arabidopsis thaliana genome

2009
BMC Genomics
PMCID: 2770528
PMID: 19814816
DOI: 10.1186/1471-2164-10-463

[…] re created for each segment. Specifically, the following were identified for each of the genome segments: (1) the set of overrepresented words (signature words), (2) words missing from the sequences (unwords), (3) word-based clusters, (4) word co-occurrences and (5) functional categorizations of the signature words. The results are detailed in the remainder of this section. […]

library_books

On finding minimal absent words

2009
BMC Bioinformatics
PMCID: 2698904
PMID: 19426495
DOI: 10.1186/1471-2105-10-137

[…] t are absent from the entire known genetic data. Herold et al. [] used the term "unword" also to designate the shortest absent words. According to the definition, any given DNA sequence has nullomers/unwords of a certain size, that are uniquely defined for that sequence, and also of the shortest possible size.The algorithm used by Hampikian and Andersen [] to obtain the absent words tracks the occ […]


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Unwords institution(s)
Center of Biotechnology, Bielefeld University, Postfach, Bielefeld, Germany

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