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UROX specifications

Information


Unique identifier OMICS_26612
Name UROX
Alternative names URO, Veda
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Medium
Version 2.0.2
Stability Stable
Requirements
VTK
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Xavier Siebert

Additional information


https://hal.archives-ouvertes.fr/hal-00308759/document

Publication for UROX

UROX citation

library_books

Quaternary structure of the specific p53–DNA complex reveals the mechanism of p53 mutant dominance

2011
Nucleic Acids Res
PMCID: 3203597
PMID: 21764777
DOI: 10.1093/nar/gkr386

[…] dna-bound em maps and the published structure obtained from negatively stained p53–dna complexes (), were performed using chimera (). fitting of atomic models was performed using chimera and veda/urox [http://mem.ibs.fr/veda/, ()]., for the docking, we used atomic coordinates of human p53 [pdb: 2ata for the core domain (), 1c26 for the tetramerization domain (); model coordinates […]


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UROX institution(s)
Mathematics and Operational Research, Polytechnic Institute of Mons, Mons, Belgium; Institut de Biologie Structurale J. P. Ebel, Grenoble, France
UROX funding source(s)
Supported by a Marie Curie International Reintegration Grant (IRG-021715).

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