Ursgal statistics

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Ursgal specifications

Information


Unique identifier OMICS_18651
Name Ursgal
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License MIT License
Computer skills Advanced
Version 0.3.4
Stability Beta
Maintained Yes

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Maintainers


  • person_outline Lukas PM Kremer <>
  • person_outline Stefen Schulze <>
  • person_outline Johannes Leufken <>
  • person_outline Christian Fufezan <>

Publication for Ursgal

Ursgal in publications

 (2)
PMCID: 5404775
PMID: 28441411
DOI: 10.1371/journal.pone.0176194

[…] 2.0.1885 []). then, mzml files were converted to the mascot generic format (mgf) if required using pymzml []. peptide spectrum matches (psms) and statistical post processing was performed using ursgal []. the following peptide database search algorithms were employed: omssa (version 2.1.9) [], x! tandem (version sledgehammer) [], and ms-gf+ (version 9979 [] using default values […]

PMCID: 4911631
PMID: 27297041
DOI: 10.1038/ncomms11847

[…] isolation window was 1.5 m/z. full scan resolution was set to 70,000 (fwhm). some samples were additionally analysed with an ms1 resolution of 140,000 (fwhm)., ms2 spectra were analysed using ursgal. post processing was performed using percolator (v. 2.08) and psms were filtered by 5% posterior error probability (pep). complete analysis pipeline was executed using the python framework […]


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Ursgal institution(s)
Institute of Plant Biology and Biotechnology, University of Muenster, Münster, Germany
Ursgal funding source(s)
Supported by the Deutsche Forschungsgemeinschaft (HI 739/13-1).

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