Ursgal statistics

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Ursgal specifications

Information


Unique identifier OMICS_18651
Name Ursgal
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License MIT License
Computer skills Advanced
Version 0.3.4
Stability Beta
Maintained Yes

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Documentation


Maintainers


  • person_outline Lukas PM Kremer
  • person_outline Stefen Schulze
  • person_outline Johannes Leufken
  • person_outline Christian Fufezan

Publication for Ursgal

Ursgal citations

 (2)
library_books

Comparative transcriptome and proteome analysis reveals a global impact of the nitrogen regulators AreA and AreB on secondary metabolism in Fusarium fujikuroi

2017
PLoS One
PMCID: 5404775
PMID: 28441411
DOI: 10.1371/journal.pone.0176194

[…] Intensity alignment and ratio calculation was performed as described previously []. Illustrations of logical relations between sets of regulated genes and proteins (Venn diagrams) were created using Ursgal []. Linear fits and coefficients of determination between gene ratios stemming from microarray data and protein ratios stemming from proteomics data was calculated using the linregress function […]

library_books

Calredoxin represents a novel type of calcium dependent sensor responder connected to redox regulation in the chloroplast

2016
Nat Commun
PMCID: 4911631
PMID: 27297041
DOI: 10.1038/ncomms11847

[…] MS2 Spectra were analysed using Ursgal. Post processing was performed using percolator (v. 2.08) and PSMs were filtered by 5% posterior error probability (PEP). Complete analysis pipeline was executed using the Python framework Ursg […]


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Ursgal institution(s)
Institute of Plant Biology and Biotechnology, University of Muenster, Münster, Germany
Ursgal funding source(s)
Supported by the Deutsche Forschungsgemeinschaft (HI 739/13-1).

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