UTRScan pipeline

UTRScan specifications

Information


Unique identifier OMICS_24951
Name UTRScan
Interface Web user interface
Restrictions to use None
Input data A sequence.
Input format FASTA
Programming languages Perl
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Graziano Pesole <>

Publications for UTRScan

UTRScan IN pipeline

2010
PMCID: 3017843
PMID: 21083898
DOI: 10.1186/1471-2229-10-251

[…] to excel sheets. different structural components namely, coding and untranslated regions (5'utrs and 3'utrs) in the unigene sequences was determined using the software tools fgenesh [36] and utrscan [37], respectively. the aminoacid sequences encoded by the predicted coding nucleotide regions of the microsatellite carrying unigenes were analyzed using the software pfam [38] to determine […]

UTRScan institution(s)
Istituto Tecnologie Biomediche del Consiglio Nazionale delle Ricerche (CNR), Bari, Italy; Dipartimento di Biochimica e Biologia Molecolare ‘E. Quagliariello’, Universita di Bari, Bari, Italy; Dipartimento di Chimica Strutturale e Stereochimica Inorganica, Universita degli Studi di Milano, Milano, Italy; Telethon Institute of Genetics and Medicine, Naples, Italy; Dipartimento di Scienze Biomolecolari e Biotecnologie, Universita di Milano, Milano, Italy
UTRScan funding source(s)
Supported by Ministero dell’Istruzione, dell’Universita e della Ricerca, Italy: Fondo Italiano Ricerca di Base, Italy: ‘Laboratorio Internazionale di Bioinformatica’ (LIBI); Laboratorio di Bioinformatica per la Biodiversita Molecolare (MBLAB).

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