UVP specifications


Unique identifier OMICS_32524
Name UVP
Alternative name Unified Variant analysis Pipeline
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Some WGS data in the form of Illumina short reads, which can be either paired-end or single-end reads.
Biological technology Illumina
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 2.5.1
Stability Stable
BEDtools, Bcftools, BWA, FastQC, Fastqvalidator, GATK, Kraken, Picard, Prinseq-lite.pl , Pigz, Qualimap, Samtools, SnpEff, Vcftools
Maintained Yes



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  • person_outline James Posey <>

Publication for Unified Variant analysis Pipeline

UVP institution(s)
Critical Path Institute, Tucson, AZ, USA; Joint unit Infection and Public Health FISABIOCSISP/University of Valencia, Institute of integrative Systems Biology, Valencia, Spain; [etc.]
UVP funding source(s)
Supported by the Bill & Melinda Gates Foundation under grant agreement OPP1115887, grant agreement FIND OPP1115209, The South African MRC and the EDCTP, the Ministerio de Economía y Competitividad (Spanish Government) research grant SAF2016-77346-R, the European Research Council (ERC) (638553-TBACCELERATE), NSERC, Genome Canada, and the Sloan Foundation.

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