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V-Phaser 2

A software package for inferring intrahost diversity within viral populations. V-Phaser 2 adds three major methodologies to the state of the art: (i) a technique to efficiently utilize paired end read data for calling phased variants, (ii) a new strategy to represent and infer length polymorphisms, and (iii) an in line filter for erroneous calls arising from systematic sequencing artifacts. It utilizes paired reads in phasing, extending the distance between phased sites from a read length to a fragment length.

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V-Phaser 2 classification

  • Viruses

V-Phaser 2 specifications

Software type:
Restrictions to use:
Academic or non-commercial use
Computer skills:
Command line interface
Operating system:

V-Phaser 2 distribution


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Broad Institute of MIT & Harvard, Cambridge, MA, USA

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