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V-Phaser 2

A software package for inferring intrahost diversity within viral populations. V-Phaser 2 adds three major methodologies to the state of the art: (i) a technique to efficiently utilize paired end read data for calling phased variants, (ii) a new strategy to represent and infer length polymorphisms, and (iii) an in line filter for erroneous calls arising from systematic sequencing artifacts. It utilizes paired reads in phasing, extending the distance between phased sites from a read length to a fragment length.

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V-Phaser 2 forum

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V-Phaser 2 classification

  • Viruses

V-Phaser 2 specifications

Software type:
Package/Module
Restrictions to use:
Academic or non-commercial use
Computer skills:
Advanced
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
Version:
2.0
Maintained:
Yes

V-Phaser 2 distribution

versioning

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V-Phaser 2 support

Documentation

Additional information

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Credits

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Publications

Institution(s)

Broad Institute of MIT & Harvard, Cambridge, MA, USA

Link to literature

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