V-REVCOMP statistics

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Associated diseases

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V-REVCOMP specifications

Information


Unique identifier OMICS_23550
Name V-REVCOMP
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format FASTA
Output data A file containing all entries of the input file with their correct orientation and a file with the detection statistics.
Output format FASTA+CSV
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Martin Hartmann <>

Publication for V-REVCOMP

V-REVCOMP in publication

PMCID: 4229327
PMID: 24986151
DOI: 10.1111/1751-7915.12141

[…] ; kav et al., ; pope et al., ) were retrieved. the regions of the 16s rrna genes sequenced were determined for each dataset and simultaneously screened for possible reverse complementarity using v-revcomp (hartmann et al., ). those seven datasets that were found to overlap for the v1 and v2 regions at a minimum were retained (supporting information table ); the other two datasets (hess et […]


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V-REVCOMP institution(s)
Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC, Canada; Department of Botany, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia; Molecular Ecology, Agroscope Reckenholz-Tanikon Research Station ART, Zurich, Switzerland; Biotechnology and Planetary Protection Group, Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA; Department of Natural Resources and Environmental Sciences, University of Illinois, Urbana, IL, USA; Department of Civil Engineering, Glasgow University, Glasgow, UK; Department of Food and Environmental Hygiene, University of Helsinki, Helsinki, Finland; Graduate Program in Bioinformatics, University of British Columbia, Vancouver, BC, Canada; Department of Plant and Environmental Sciences, University of Gothenburg, Goteborg, Sweden
V-REVCOMP funding source(s)
Supported by a grant to the Centre for Microbial Diversity and Evolution from the Tula Foundation and a grant from Genome British Columbia and by the Frontiers in Biodiversity Research Centre of Excellence (University of Tartu, Estonia).

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