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A polymorphism discovery algorithm for short reads.

Software type:
Package
Interface:
Command line interface
Restrictions to use:
None
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
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  • (Nusbaum et al., 2009) Sensitive, specific polymorphism discovery in bacteria using massively parallel sequencing. Nature methods.
    PMID: 19079253
  • (Neuman et al., 2013) Analysis of insertion-deletion from deep-sequencing data: software evaluation for optimal detection. Briefings in bioinformatics.
    PMID: 22707752

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