VAI pipeline

VAI specifications

Information


Unique identifier OMICS_10984
Name VAI
Alternative name Variant Annotation Integrator
Interface Web user interface
Restrictions to use None
Input data The VAI requires variant calls as its input and requires a gene annotation track.
Database management system MySQL
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Angie Hinrichs <>

Information


Unique identifier OMICS_10984
Name VAI
Alternative name Variant Annotation Integrator
Software type Framework/Library
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data The VAI requires variant calls as its input and requires a gene annotation track.
Operating system Unix/Linux
Programming languages C, Javascript
Database management system MySQL
Computer skills Advanced
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Maintainer


  • person_outline Angie Hinrichs <>

Publication for Variant Annotation Integrator

VAI IN pipeline

2014
PMCID: 4254439
PMID: 25473428
DOI: 10.1186/s13073-014-0092-4

[…] datasets in a searchable format further enable hypothesis generation and identification of putative regulatory variants (tableĀ 1) [39,47,48]. the ucsc genome browser, for example, includes a variant annotation integrator [49], and the ensembl genome browser includes the ensembl variant effect predictor [50]. the searchable regulomedb database enables annotations for particular variants […]

VAI institution(s)
Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA; Computational Biology Graduate Group, University of California, Berkeley, Berkeley, CA, USA; Howard Hughes Medical Institute, University of California, Santa Cruz, Santa Cruz, CA, USA
VAI funding source(s)
This work was funded by the National Human Genome Research Institute (grant U41HG002371-15 to UCSC Center for Genomic Science).

VAI reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review VAI